FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9861760
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG900310.9129303491466025No Hit
GGGGGT421910.42782424232591343No Hit
GGGTGG402220.40785823220195994No Hit
TGGGGG390250.3957204393536245No Hit
GTGGGG376330.38160531183074825No Hit
GGGGTG364620.369731163605685No Hit
CGGGGG355100.36007771432279834No Hit
GGTGGG354930.35990533129988966No Hit
GGGCGG332430.3370899312090337No Hit
GCGGGG302770.30701416380037644No Hit
AGGGGG299440.3036374845869297No Hit
GAGGGG290890.29496763255240444No Hit
GGGGGC289030.293081559478227No Hit
GGGGAG285570.28957305795314425No Hit
GGCGGG284310.28829539554805633No Hit
GGGGGA272440.2762590044779025No Hit
GGGGCG269970.27375438055681744No Hit
GGAGGG259790.2634316795379324No Hit
GGGGTT235890.23919665455253425No Hit
GGGAGG231940.23519128431436173No Hit
GGGTGT210200.21314653773768574No Hit
GTGGGT202740.2055819650853397No Hit
GGGTTG192550.19524912388863652No Hit
GTGTGG190960.19363683561554934No Hit
GGTGGT188990.1916392205853722No Hit
TGGTGG186500.1891143163086508No Hit
TTGGGG184680.187268803945746No Hit
GGTTGG184450.18703557985592836No Hit
TGGGGT178490.18099203387630605No Hit
GTTGGG176050.17851783048867545No Hit
GTGGTG172160.17457330131741192No Hit
GGGCGT171930.17434007722759426No Hit
TGGGTG171000.17339704069050554No Hit
GGTGTG167580.16992909987669544No Hit
CTGGGG162630.16490971185670714No Hit
GGGGTA161730.1639970958530729No Hit
GTCGGG158880.16110714517489777No Hit
GGCTGG158350.16056971575053539No Hit
CGGGGT157510.1597179408138101No Hit
GGCGGT155670.157852148095269No Hit
TGTGGG152810.15495205723927574No Hit
CGGTGG151370.15349187163346095No Hit
GCGGGT151040.15315724576546175No Hit
GGCCGG150030.15213308780582777No Hit
GGGGCT149900.1520012654941917No Hit
ATGGGG148400.15048023882146797No Hit
GGGCTG148060.1501354727756506No Hit
GGGTAG147280.14934453890583427No Hit
AGGGGT146270.14832038094620026No Hit
CCGGGG145850.14789449347783762No Hit
GGGGAT145300.14733678369783892No Hit
CGGGTG144130.1461503828931144No Hit
AGGGTG143590.14560281329093389No Hit
AGGTGG142860.14486258031020832No Hit
TAGGGG140730.14270272243494062No Hit
GTAGGG137680.13960996820040236No Hit
GGATGG137330.13925506197676682No Hit
GGGGTC135180.1370749237458628No Hit
GTGGGC135130.13702422285677202No Hit
TCGGGG134860.13675043805568174No Hit
GAGGGT134400.13628398987604648No Hit
GTGAGG132830.1346919819585956No Hit
TGCGGG132030.13388076773314297No Hit
GCGTGG131650.13349544097605295No Hit
GTGGGA131390.13323179635278085No Hit
GTGCGG129470.13128488221169446No Hit
TGGCGG129240.13105165812187683No Hit
GGAGGT129120.13092997598805894No Hit
CGTGGG126420.1281921279771562No Hit
GCTGGG126310.12808058602115646No Hit
GTGGTT125570.12733021286261276No Hit
GGTCGG124530.12627563436952433No Hit
GGTGAG124460.1262046531247972No Hit
GGGTGC124310.12605255045752484No Hit
GCGGTG124030.1257686254786164No Hit
CAGGGG124000.1257382049451619No Hit
TGAGGG122920.12464306574080082No Hit
GTTGGT121470.12317273995716789No Hit
TGGGTT120520.12220942306444287No Hit
GGTAGG120340.12202689986371602No Hit
AGTGGG120320.12200661950807969No Hit
CGGGGC120240.12192549808553443No Hit
GGGATG120180.12186465701862549No Hit
GGAGTG119020.12068839639171912No Hit
CGCGGG118680.12034363034590174No Hit
GGGTCG117910.11956283665390356No Hit
TGGGGA117650.11929919203063144No Hit
GTGTGT117060.11870092153936011No Hit
GGGCAG116730.1183662956713609No Hit
GTGGAG116570.11820405282627036No Hit
GGCGAG115560.11717989486663637No Hit
GCGCGG115020.11663232526445584No Hit
GATGGG114380.1159833538840937No Hit
GCCGGG114310.11591237263936661No Hit
TGGGAG113780.11537494321500422No Hit
GGTGTT112850.11443190667791552No Hit
GGGCGC112830.11441162632227918No Hit
TGGGGC112590.1141682620546434No Hit
AAGGGG111830.11339760854046338No Hit
GGCGTG111710.11327592640664545No Hit
GTGGCG110830.11238359075864755No Hit
GGGTTT109720.111258031020832No Hit
ACGGGG109540.11107550782010513No Hit
TTGGGT109310.1108422837302875No Hit
GCAGGG109270.11080172301901486No Hit
TGGTTG108520.11004120968265299No Hit
GAGTGG108510.11003106950483482No Hit
GGGCCG107520.10902719190083716No Hit
GGGGCC107300.10880410798883769No Hit
GGGGAC106580.10807401518593031No Hit
CGGGCG106280.10776980985138555No Hit
GGTGGA106200.10768868842884029No Hit
GGTGGC106080.10756700629502239No Hit
GCGGGC103670.10512322344084625No Hit
CGGCGG103650.10510294308520994No Hit
GAGGTG103180.1046263547277565No Hit
TTTGGG103100.10454523330521125No Hit
GGCGGA102610.10404836459212148No Hit
CGGGGA101710.10313574858848723No Hit
GGGTGA101620.10304448698812381No Hit
GGGAGT99740.10113813355831008No Hit
GGCGGC98820.10020523719903954No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)