FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12944094
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG392220.30301077850639835No Hit
GTGGGG246850.19070473375734137No Hit
GGGGGT245030.18929868710780376No Hit
GGGTGG234840.1814263709766014No Hit
GGTGGG220290.17018572331134182No Hit
GGGGTG219860.169853525476561No Hit
AGGGGG202700.156596514209492No Hit
TGGGGG192160.14845380449184006No Hit
GGGGAG179230.13846469285528984No Hit
CGGGGG179060.13833335882758577No Hit
GCGGGG174750.13500365494873567No Hit
GGGTGT172860.13354352958190818No Hit
GTTGGG169860.1312258702694835No Hit
GTGTGG161970.1251304262778067No Hit
GGGTTG161290.12460509016699044No Hit
GAGGGG160680.12413383277346408No Hit
GGGGGC160420.12393296896638731No Hit
GGTGGT160050.12364712431785492No Hit
GGGGTT160010.12361622219368926No Hit
GGCGGG159090.12290547333787905No Hit
GGGGCG157450.12163848624708688No Hit
GGGGGA156090.12058781402545439No Hit
GGAGGG154810.11959894605215321No Hit
GTGGGT150910.11658598894600117No Hit
ATGGGG145650.11252235961821662No Hit
GGGCGG145180.11215925965927008No Hit
GTGGTG141510.1093239897670706No Hit
TTGGGG137600.10630330712987715No Hit
GGGAGG136390.10536851787386588No Hit
AGGTGG135750.10487408388721528No Hit
GGGTAG135710.10484318176304962No Hit
TGGTGG133330.10300450537519272No Hit
AGTGGG131720.10176069487752484No Hit
GGTTGG131450.10155210553940662No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)