FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005482924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42774259
Sequences flagged as poor quality0
Sequence length25-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2225010.5201749959011563No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1228970.2873153220491792No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG550860.1287830608591022No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA511800.11965140062391262No Hit
GCCGGCTTCACGCTCAGGAGAAAGCACTACCTCTCTTCCTCGTGGTTTTC450900.10541386584861703No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)