FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9804234
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG797190.8131078878778292No Hit
GGGGGT422560.4309974649727862No Hit
GTGGGG378010.38555791304042725No Hit
GGGTGG332580.33922078971187347No Hit
GGGGTG316240.3225545208325301No Hit
CGGGGG315770.32207513610956245No Hit
GGGGGC306790.31291582799839335No Hit
GGTGGG303530.3095907339624901No Hit
GGGGCG298260.30421550526027835No Hit
TGGGGG291770.2975959162133421No Hit
GGCGGG285090.2907825333422274No Hit
GCGGGG280450.2860498841622915No Hit
AGGGGG276460.28198021385454486No Hit
GGGGAG273770.2792365012911769No Hit
GAGGGG273340.2787979152680362No Hit
GGGGGA264070.26934281658312115No Hit
GGGCGG261770.26699689134306664No Hit
GGGAGG260290.2654873394494664No Hit
GGAGGG230720.23532690060233163No Hit
GTGGGT187700.19144789893835662No Hit
GGGGTT187400.19114190868965386No Hit
GGGTGT185390.18909177402334543No Hit
GGTGGT177520.1810646298323765No Hit
TTGGGG175770.17927968671494376No Hit
CGGGGT168760.17212971457025608No Hit
GTGTGG168390.17175232659685602No Hit
GTTGGG163230.16648929431916862No Hit
CTGGGG162380.16562232194784415No Hit
TGGGGT158680.16184844221384354No Hit
GGGGCT154250.15732998620799954No Hit
GTGGCG153320.156381416437021No Hit
GTCGGG150740.15374990029817728No Hit
GGCGGT149060.15203635490544187No Hit
GGGCGT148490.15145497343290662No Hit
GCGGGT146370.14929264234207384No Hit
GAGGGT146330.1492518436422468No Hit
ATGGGG145130.1480278826474358No Hit
GTGGGC143250.1461103437555652No Hit
GTGGTG143240.14610014408060842No Hit
CGGTGG143220.14607974473069493No Hit
GCGTGG142780.14563095903259754No Hit
GGGTTG141770.14460079186196492No Hit
GGGTCG140230.14303004191862412No Hit
AGGGGT139950.1427444510198349No Hit
GTGGAG139370.1421528698723429No Hit
GGGGTC139210.14198967507303478No Hit
CGGGTG138720.1414898910001536No Hit
GGGGAT138520.14128589750101844No Hit
GGGTAG138160.14091870920257513No Hit
TGTGGG136120.1388379755113964No Hit
TGGTGG135090.1377874089908503No Hit
AGGTGG134820.1375120177670178No Hit
GAGTGG131050.13366674030831985No Hit
GGGGTA130870.1334831461590982No Hit
GGGTGA130340.13294256338639No Hit
GGTGTG129470.13205519166515203No Hit
GGTTGG128390.1309536267698221No Hit
GGGAGT128190.13074963327068692No Hit
GACGGG127220.12976026479988137No Hit
GTGAGG126910.12944407487622184No Hit
GCTGGG126860.12939307650143805No Hit
GCCGGG126740.12927068040195694No Hit
GTGGGA125670.1281793151815838No Hit
CGGGCG124530.12701655223651334No Hit
GGAGGT124240.12672076166276733No Hit
TAGGGG123740.1262107779149294No Hit
CGTGGG122810.12526220814395087No Hit
CGGGGA121640.12406884617401012No Hit
TGCGGG121170.12358946145104246No Hit
GGTGGC121160.1235792617760857No Hit
GGGGCA121130.12354866275121545No Hit
GTAGGG120900.12331407022721No Hit
GTGCGG119900.12229410273153415No Hit
GGGTGC119290.12167192255917189No Hit
GGTCGG119080.12145772938507995No Hit
TCGGGG118970.12134553296055561No Hit
CGCGGG118620.12098854433706906No Hit
CAGGGG118580.12094774563724203No Hit
GGGCCG118390.12075395181306361No Hit
CCGGGG117970.12032556546487977No Hit
GGTGGA117930.12028476676505273No Hit
GGGCTG117790.12014197131565811No Hit
TGGGTG117780.12013177164070135No Hit
GATGGG117010.11934639666903095No Hit
GGGGAA116930.11926479926937687No Hit
CGGGGC116790.11912200381998227No Hit
GGCGGC116140.11845902494779295No Hit
GGATGG115370.11767364997612255No Hit
AGTGGG114370.1166536824804467No Hit
GCGGTG114250.11653128638096562No Hit
TGGCGG112960.11521552831154377No Hit
GGCTGG112770.11502173448736536No Hit
GAGGTG112600.11484834001310046No Hit
GGGCAG112550.11479734163831667No Hit
GGCCGG112540.11478714196335991No Hit
TGAGGG112320.11456274911431123No Hit
CGGCGG111690.11392016959203544No Hit
GGCAGG110990.11320619234506235No Hit
CGGGAG110850.11306339689566773No Hit
TGGGGA110710.11292060144627311No Hit
GGCGGA110630.11283900404661905No Hit
GCGGGC110440.11264521022244063No Hit
GGGCGC108850.11102346190431603No Hit
TGGGGC108610.11077866970535383No Hit
AGCGGG108480.11064607393091598No Hit
TGGGCG108190.11035028335716997No Hit
GGGGCC107940.11009529148325102No Hit
GCGGCG107690.10984029960933205No Hit
AGGGTG107060.10919772008705626No Hit
GCGAGG107050.1091875204120995No Hit
GGGGAC106340.10846334349016964No Hit
ACGGGG105880.10799415844215876No Hit
AAGGGG105710.10782076396789388No Hit
GGGATG105560.10766776884354251No Hit
GGTGCG105250.10735157891988299No Hit
GCAGGG105200.10730058054509918No Hit
TGGAGG103930.10600522182559087No Hit
GGCGTG103930.10600522182559087No Hit
CGGAGG103770.10584202702628273No Hit
GAGGCG103700.10577062930158543No Hit
GAGGGC103110.10516884847913666No Hit
GGTAGG103050.10510765042939611No Hit
GGTGAG102470.10451606928190413No Hit
TGGGAG102110.10414888098346081No Hit
GAGGAG101300.10332270731196339No Hit
AGGGCG101140.10315951251265525No Hit
GGAGTG100970.10298611803839035No Hit
GAGCGG100300.10230273981628754No Hit
GGACGG99740.10173155801870906No Hit
GGCGCG99610.1015989622442712No Hit
AGAGGG99470.10145616679487657No Hit
GGAGGC98700.10067079182320617No Hit
GGGTTT98560.10052799637381156No Hit
AGGGGC98480.10044639897415748No Hit
AGGGAG98190.1001506084004115No Hit
CGAGGG98070.1000282123009304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)