FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3973255
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG205390.5169313321193832No Hit
GCAATT196800.49531177837818113No Hit
TGGGGG111200.2798712894088097No Hit
GGGGGT109300.2750893159386951No Hit
GGGGTG99630.2507515878039542No Hit
GGTGGG98220.2472028601235008No Hit
GTGGGG94890.23882182241008945No Hit
AGGGGG91630.23061696266662976No Hit
GGGGCG86030.21652272507050266No Hit
GGGTGG84770.21335152161137405No Hit
CGGGGG84000.21141356394190658No Hit
GCGGGG81160.2042657720181564No Hit
GGGCGG78240.19691663384303298No Hit
GGAGGG77960.19621192196322665No Hit
GGGGGC76160.19168163130732863No Hit
GGGGGA73720.18554057064044469No Hit
GAGGGG73580.1851882147005415No Hit
GGGGAG71850.1808341020145951No Hit
GGCGGG68270.1718238572656424No Hit
GGGAGG67720.17043960178745135No Hit
TGGTGG64880.16329180986370118No Hit
GTTGGG64190.16155519844560695No Hit
TGGGGT63870.16074981344011396No Hit
GGGGTT63410.1595920724947178No Hit
GAGGGT57880.14567401286854229No Hit
TTGGGG56830.14303134331926845No Hit
GGGGAT56690.14267898737936527No Hit
GTGGGT56130.14126956361975257No Hit
TGGGGC56030.141017880805536No Hit
GTGGTG55430.1395077839202367No Hit
GGGAGT53650.13502782982718198No Hit
GGTGGT52990.13336672325335275No Hit
GGGTTG52640.1324858334035948No Hit
GGGTAT52300.1316301118352585No Hit
AGGGGT52290.13160494355383684No Hit
CTGGGG52070.13105124136256044No Hit
TGTGGG51210.12888676916029804No Hit
AGGTGG50750.1277290282149019No Hit
GGGTGT50380.12679780180230063No Hit
GGCGGT50330.12667196039519235No Hit
ATGGGG49820.12538837804268793No Hit
GTGTGG49030.12340008381037713No Hit
TGGGAG48890.12304772787047397No Hit
CGGGGT48840.12292188646336567No Hit
GGTTGG48840.12292188646336567No Hit
TCGGGG48650.12244368911635423No Hit
TGGGTG48170.12123561160811477No Hit
GGTGGA47550.11967517815997211No Hit
GGGTAG46990.11826575440035941No Hit
GGCAGG46810.11781272533476961No Hit
AGGGTG46360.1166801526707951No Hit
CGGGTG45920.11557274828824227No Hit
GGGGCT45790.11524556062976073No Hit
GGGTCG45050.11338310780455822No Hit
GGGCGT44500.11199885232636717No Hit
GGCGGA44440.11184784263783723No Hit
TGGGTT44250.1113696452908258No Hit
GCGGGT43560.10963303387273154No Hit
GGATGG43270.10890315371150355No Hit
CGGTGG43080.10842495636449209No Hit
CGGGCG42920.1080222638617456No Hit
CGTGGG42860.10787125417321566No Hit
GGTGGC42530.10704070088630104No Hit
AAGGGG42520.10701553260487938No Hit
TGGGGA42320.10651216697644626No Hit
ACGGGG42030.10578228681521824No Hit
GGTCGG41850.10532925774962845No Hit
GTGGCG41750.1050775749354119No Hit
GGGCAG41500.1044483678998705No Hit
GGCCGG41460.10434769477418387No Hit
GGGTGA41190.1036681511757992No Hit
GTGGAG40960.10308928070310111No Hit
GCTGGG40920.10298860757741449No Hit
GGGGTC40790.10266141991893296No Hit
GGTGTG40750.10256074679324634No Hit
GTGGGC40650.1023090639790298No Hit
TAGGGG40470.10185603491343999No Hit
AGGGGC40380.10162952038064509No Hit
GGTGAG39910.10044661115382729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)