FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19881326
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG416430.20945786010450207No Hit
TGGGGG321310.16161396880670836No Hit
GGGTGG314040.15795727105928448No Hit
GTGGGG293800.14777686357539732No Hit
GGGGGT288790.14525691093239956No Hit
GGTGGG287230.14447225501960986No Hit
GGGGTG282270.14197745160458614No Hit
GTGTGG251500.12650061670936838No Hit
GGTGGT251310.12640504964306706No Hit
GGTTGG251040.12626924381200733No Hit
GGGTTG250450.12597248292191376No Hit
GGGGTT249890.12569081156860462No Hit
GGGTGT242130.12178765138703525No Hit
TTGGGG238150.1197857728403025No Hit
GTTGGG238130.1197757131491129No Hit
AGGGGG232440.11691373100566832No Hit
GTGGGT231610.11649625382129944No Hit
TGTGGG227650.11450443496575631No Hit
TGGTGG227100.11422779345804199No Hit
GTGGTG216050.10866981407578145No Hit
TGGGGT210810.10603417498410317No Hit
GGTGTG209990.1056217276453291No Hit
TTGTGG206530.10388140106952624No Hit
GTGTGT202660.10193485082433636No Hit
GGTTGT202260.10173365700054413No Hit
CGGGGG201590.10139665734569213No Hit
GAGGGG200100.10064721035206606No Hit
GGGTTT199850.1005214642121959No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)