FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16345087
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG775410.47439943268579726No Hit
GGGGGT443750.27148830715920935No Hit
GGGTGG422790.2586648819917569No Hit
GTGGGG403830.24706506609600792No Hit
CGGGGG398660.24390203612865446No Hit
TGGGGG381610.23347076708738226No Hit
GGGGTG340350.2082277078121395No Hit
GGAGGG338360.20701021658679455No Hit
GGTGGG329560.20162633579129927No Hit
GGGGCG324750.19868355549285238No Hit
GGGGGC324420.1984816599630213No Hit
GCGGGG322750.19745994622114893No Hit
AGGGGG322020.19701332883697714No Hit
GGGCGG309130.1891271670808482No Hit
GGGGAG301310.1843428548284876No Hit
GGCGGG294960.18045789539082904No Hit
GGGAGG289060.1768482480393038No Hit
GAGGGG285220.1744989182376331No Hit
GGGGGA277160.1695677728726681No Hit
GTGGGT237300.14518124008761776No Hit
GGGTGT236210.14451437303453937No Hit
GGGGTT228130.13957099157685732No Hit
GTGTGG223790.13691575945726078No Hit
CGGGGT221120.13528224107953662No Hit
GTGGTG215520.13185613511876687No Hit
CTGGGG214490.1312259763438396No Hit
GGTGGT210610.12885217435673485No Hit
GGGTAG208840.12776928015127725No Hit
TGGGGT206520.12634989339610123No Hit
GTTGGG204110.12487544422369852No Hit
CGGTGG202920.12414739670703497No Hit
AGGTGG202420.12384149438910909No Hit
GGTTGG197480.1208191794880015No Hit
ATGGGG195710.11973628528254392No Hit
GGGGCT194400.11893482120957814No Hit
GGGTTG192280.11763779538157244No Hit
GGGTCG191680.1172707126000614No Hit
GTCGGG190850.11676291475230446No Hit
GTGGCG188300.11520281293088254No Hit
TGGTGG188150.11511104223550478No Hit
GTAGGG187670.11481737601029594No Hit
TTGGGG185230.11332457269881768No Hit
GGCTGG183430.11222332435428456No Hit
GGGGAT180330.11032672998314418No Hit
GGATGG178750.10936007865849841No Hit
AGGGGT176610.10805081673777571No Hit
GGGTGC175070.10710863759856401No Hit
GGAGGT173960.10642953445276859No Hit
GGGCGT172260.10538946657182063No Hit
GTGGAG172180.1053405222009525No Hit
GGCCGG171620.10499791160487551No Hit
GGGCCG169700.10382324670404018No Hit
GCGTGG168470.10307072700194254No Hit
CCGGGG167670.10258128329326115No Hit
GGTGTG166340.10176758312757835No Hit
AGTGGG166320.10175534703486129No Hit
GGCGGT166050.10159015978318134No Hit
TGTGGG166010.10156568759774726No Hit
CGCGGG165590.10130872965068954No Hit
CGGGGA164600.1007030430611963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)