FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12172939
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG645420.5302088509603146No Hit
GGGGGT303610.24941388435446854No Hit
GTGGGG283140.23259789603808909No Hit
TGGGGG275420.22625596004383167No Hit
AGGGGG272280.2236764679425404No Hit
GGGTGG272180.22359431851256298No Hit
GGCGGG265930.21845997913897375No Hit
GGTGGG261510.21482897433397144No Hit
GGGGCG259380.21307919147545226No Hit
CGGGGG256950.21108296032700075No Hit
GGGGTG249160.2046835197317591No Hit
GCGGGG244920.20120038390071615No Hit
GGGCGG239090.19641107213303213No Hit
GGGGGC234090.19230360063416074No Hit
GGGGAG215620.17713060091732982No Hit
GGAGGG212110.1742471559251221No Hit
GAGGGG207340.1703286281151988No Hit
GGGAGG204600.1680777337338173No Hit
GGGGGA196980.1618179471695373No Hit
GGGTGT185320.1522393236341692No Hit
GTGGGT169550.13928435852672882No Hit
AGGGGT153340.12596793592738778No Hit
GGCCGG152600.1253600301455548No Hit
GTGTGG148330.12185224948551866No Hit
GGTGGT147580.12123612876068794No Hit
CGGGGT146730.1205378586058798No Hit
GGGCCG145700.11969171947711231No Hit
CGGTGG143170.11761333889868339No Hit
GGGGTT143070.11753118946870596No Hit
GGGGCT141310.11608535950110323No Hit
GGATGG141270.11605249972911225No Hit
GGCGGT141260.1160442847861145No Hit
GTTGGG140720.11560067786423639No Hit
GGTGGA139650.11472167896347792No Hit
TGGGGT139320.11445058584455242No Hit
GGTTGG138500.11377696051873751No Hit
GTAGGG137440.11290617656097676No Hit
GGGGCC136570.11219147652017315No Hit
TTGGGG134860.11078672126755913No Hit
ATGGGG134780.11072100172357718No Hit
GCGGGT134180.11022810514371262No Hit
CTGGGG133670.10980914305082776No Hit
GGGTAG133100.10934089129995642No Hit
GTGGTG132750.10905336829503541No Hit
TGGTGG131160.1077471923583943No Hit
CGCGGG131060.10766504292841687No Hit
GGGCGT130760.1074185946384846No Hit
GTGGCG129340.10625207273280513No Hit
TGGCGG129180.10612063364484124No Hit
GGCTGG127940.10510198071312113No Hit
CGGGGC127830.10501161634014596No Hit
CCGGGG127120.10442835538730623No Hit
GCGTGG126660.10405046800941005No Hit
GGGTTG125890.10341791739858386No Hit
GGGTCG125460.1030646748496809No Hit
CGTGGG124960.10265392769979377No Hit
TGTGGG124740.10247319895384344No Hit
GTCGGG124020.10188172305800595No Hit
CAGGGG122710.10080556552530165No Hit
GGTCGG122140.10033731377443031No Hit
GCCGGG121970.1001976597434687No Hit
AGGTGG121900.10014015514248449No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)