FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14220696
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG928300.6527809890598886No Hit
GGGGGT487100.34252894513742504No Hit
GTGGGG451230.31730514455832537No Hit
GGGTGG446360.3138805583074134No Hit
CGGGGG413870.29103357529054835No Hit
GGGGCG397910.27981049591384277No Hit
GCGGGG392280.275851477311659No Hit
GGCGGG388600.27326369961076447No Hit
GGGCGG378300.2660207348501086No Hit
AGGGGG371110.2609647235268935No Hit
GGGGTG370100.2602544910600719No Hit
TGGGGG368520.25914343432979653No Hit
GGGGAG346450.24362380012905135No Hit
GAGGGG343630.24164077482564847No Hit
GGGGGC340250.23926395726341382No Hit
GGTGGG331670.23323049729774126No Hit
GGAGGG303450.21338618025446857No Hit
GGGAGG298170.20967328181405467No Hit
GGGGGA264710.18614419434885607No Hit
GGGTGT251860.1771080684095912No Hit
GTGTGG238420.16765705419762858No Hit
GTGGGT235190.16538571670472388No Hit
CTGGGG213950.15044973888760438No Hit
CGGTGG213100.1498520184947347No Hit
GGGGCT210580.14807995332999174No Hit
GTGGCG209890.147594745011074No Hit
CGGGGT209850.147566616992586No Hit
AGGTGG207250.14573829579086706No Hit
GGGTCG204530.14382559053368416No Hit
GGGGTT204200.1435935343811583No Hit
GTGGTG202470.14237699758155298No Hit
TGGTGG198860.13983844391301242No Hit
ATGGGG198550.13962045176973054No Hit
TGGGGT198160.1393462035894727No Hit
GGGTAG196720.13833359492390526No Hit
GGCGGT196660.1382914028961733No Hit
GTCGGG195980.13781322658187756No Hit
GGCTGG192160.1351270008162751No Hit
GGTGGT192120.13509887279778712No Hit
GCGGGT190330.13384014397044983No Hit
GCGTGG189850.13350260774859402No Hit
GTTGGG189760.13343931970699605No Hit
GGGTTG189170.1330244314342983No Hit
AGGGGT187300.13170944656998504No Hit
TTGGGG183710.1291849569106885No Hit
GTAGGG183560.12907947684135854No Hit
TGGGTG183370.1289458687535406No Hit
AAGGGG180000.12657608319592795No Hit
GGTTGG179140.1259713307984363No Hit
CGGGCG179130.1259642987938143No Hit
GGGCGT179100.12594320277994833No Hit
CCGGGG176900.12439616176310922No Hit
GCCGGG176780.12431177770764525No Hit
CGGGTG175730.12357341722233567No Hit
GGATGG175580.12346793715300575No Hit
GTGCGG174470.12268738463996419No Hit
GGGGAT174350.12260300058450023No Hit
GGGCCG173530.12202637620549654No Hit
GGTGTG172660.1214145918033829No Hit
TGTGGG172620.12138646378489493No Hit
GGCCGG172350.12119659966010102No Hit
GGCGTG172080.12100673553530714No Hit
CGTGGG172010.12095751150295316No Hit
GGGTGC170560.11993787083276375No Hit
AGGGCG170530.11991677481889775No Hit
GTGGAG170460.11986755078654378No Hit
CGCGGG170400.1198253587588118No Hit
AGGGTG169160.11895339018568431No Hit
GTGGGC168900.11877055806551241No Hit
ACGGGG168760.11867211000080445No Hit
GAGTGG168600.11855959792685253No Hit
GGCGCG168530.11851037389449856No Hit
GAGGGT167890.1180603255986908No Hit
GCGGTG164270.11551473992552826No Hit
TGCGGG164170.1154444198793083No Hit
TAGGGG162880.11453729128307082No Hit
GTGAGG162820.11449509925533885No Hit
CAGGGG162410.11420678706583699No Hit
CGGCGG161930.1138692508439812No Hit
AGTGGG161160.1133277864880875No Hit
GGGCAG160720.1130183782847197No Hit
GGGGCC160680.1129902502662317No Hit
GACGGG160100.11258239399815594No Hit
GGGAGT160090.11257536199353393No Hit
AGCGGG159010.11181590549435837No Hit
GCTGGG158670.11157681733721049No Hit
GCGCGG158340.11134476118468463No Hit
TCGGGG157470.11073297678257096No Hit
CGGGGC157230.11056420867164307No Hit
TGGGCG156080.10975552814011354No Hit
GGCAGG156000.10969927210313757No Hit
GCAGGG154760.10882730353001006No Hit
TGGCGG153500.10794127094763857No Hit
GGAGGT153490.10793423894301657No Hit
CGGGAG151790.10673879815727724No Hit
GCGGCG151200.10632390988457949No Hit
GGCGGC150720.10598637366272368No Hit
GGTCGG149910.105416781288342No Hit
AGGGGC149660.1052409811727921No Hit
GGGACG148800.10463622877530045No Hit
TGGGGC148630.10451668469672651No Hit
GGGCTG148460.10439714061815258No Hit
CGGAGG148450.1043901086135306No Hit
TGGGAG148330.10430572455806662No Hit
AGGCGG146870.10327905188325523No Hit
GGGGTC146010.10267429948576356No Hit
GGCGAG145460.10228753923155379No Hit
TGAGGG145440.1022734752223098No Hit
GCGGGC143450.10087410630253259No Hit
GGTGCG142930.10050844206218881No Hit
GAAGGG142730.10036780196974887No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)