FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23793747
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG665310.27961548048737345No Hit
GGGGGT449910.18908749428999141No Hit
GTGGGG419990.17651276194539683No Hit
GGGTGG413840.17392804924756072No Hit
GGGGTG406570.17087262464377723No Hit
TGGGGG396550.1666614341994979No Hit
GGTGGG375540.15783138317810977No Hit
AGGGGG330590.13893986516709622No Hit
CGGGGG326030.13702339526431043No Hit
GGGGCG323350.1358970489179363No Hit
GGGTGT319290.13419071825887702No Hit
GGGGTT309000.12986605262298537No Hit
GGCGGG302310.1270543895419246No Hit
GTGTGG300410.12625586041576387No Hit
TTGGGG297340.12496560545928308No Hit
GGAGGG295700.12427634873986008No Hit
GTGGGT291490.12250697630768285No Hit
GGTGGT288610.12129657426381812No Hit
GGGTTG287730.12092672919485949No Hit
GGGGAG278400.11700553090692274No Hit
TGGTGG277760.1167365526749528No Hit
GTGGTG277500.116627280268215No Hit
GTTGGG274870.11552194784621354No Hit
GGGCGG274860.11551774506133902No Hit
TGGGGT271080.11392909237876658No Hit
GGTTGG268990.11305071033998973No Hit
GGGGGC268140.11269347362565466No Hit
GAGGGG266150.11185711943562315No Hit
GCGGGG265260.11148307158178995No Hit
TGTGGG261030.10970529357986365No Hit
TGGGTG257760.10833098292589226No Hit
GGTGTG256000.10759129278797493No Hit
GGGAGG247220.10390124766813734No Hit
CTGGGG246340.10353140259917869No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)