FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9653092
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG253030.26212326578882705No Hit
GGGTGG158620.16432040635270026No Hit
GGGGGT153560.1590785625994241No Hit
GGTGGG153540.15905784384941116No Hit
GTGGGG146770.15204454697002784No Hit
TGGGGG140290.1453316719658323No Hit
GGGGTG132700.13746890633591807No Hit
AGGGGG126820.131377593832111No Hit
CGGGGG124550.12902601570564126No Hit
GGGGCG114540.11865628132416019No Hit
GGGCGG113310.11738207819836378No Hit
GGCGGG112930.11698842194811776No Hit
GGGGTT112850.11690554694806596No Hit
GGTGGT111540.11554846882221778No Hit
GTGTGG111010.11499942194687464No Hit
GCGGGG110590.11456432819660271No Hit
GGGTGT105840.10964362506852726No Hit
GGGGGC105750.109550390693469No Hit
GGGTTG103760.10748887506718055No Hit
GTGGGT102760.1064529375665331No Hit
GTTGGG102730.10642185944151367No Hit
GAGGGG102280.1059556875662223No Hit
GGGGGA101820.10547915631592447No Hit
TGGGGT101590.10524089069077557No Hit
TGTGGG99790.10337620318961013No Hit
TTGGGG99390.10296182818935115No Hit
GGAGGG99060.10261996881413749No Hit
GGGGAG97390.10088995318805621No Hit
GGTTGG96940.10042378131276486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)