FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15320085
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1132360.7391342802601943No Hit
GGGGGT607930.39681894715336113No Hit
GGGTGG560170.36564418539453275No Hit
GTGGGG546830.3569366619049437No Hit
GGTGGG508200.3317213971071309No Hit
TGGGGG496250.3239211792884961No Hit
GGGGTG469410.3064016942464745No Hit
AGGGGG457400.2985623121542733No Hit
CGGGGG451040.29441089915623836No Hit
GAGGGG411050.2683079108242546No Hit
GGAGGG405890.26493978329754697No Hit
GGGGAG394430.2574594070463708No Hit
GGCGGG384770.2511539590021857No Hit
GCGGGG381060.24873230141999864No Hit
GGGGGA375140.24486809309478375No Hit
GGGGCG371690.24261614736471762No Hit
GGGAGG366430.23918274604873274No Hit
GGGTGT344490.22486167668129778No Hit
GGGCGG335910.21926118556130728No Hit
GGGGGC323660.21126514637484062No Hit
GGGGTT312610.2040523926597013No Hit
GTGTGG304450.19872605145467537No Hit
GTGGGT300870.19638924979854874No Hit
GGGTTG285110.18610210060844962No Hit
TGGGGT284690.18582795069348507No Hit
GTTGGG274080.17890240165116578No Hit
GGGTAG270160.17634366911149646No Hit
GGTGGT264850.17287763090087294No Hit
GGTTGG264600.17271444642767975No Hit
TTGGGG260920.1703123709822759No Hit
TGGTGG258190.16853039653500618No Hit
AGGGGT250010.16319100057212477No Hit
TGTGGG239590.1563894717294323No Hit
ATGGGG239460.15630461580337185No Hit
AGGTGG238990.15599782899376863No Hit
CGGGGT238010.15535814585885133No Hit
GGAGGT237070.15474457223964488No Hit
CGGTGG233180.15220542183675873No Hit
GTAGGG233010.15209445639498737No Hit
GTGGTG230110.1502015165059463No Hit
TGGGTG229290.1496662714338726No Hit
GAGGGT226530.1478647148498197No Hit
CTGGGG222540.14526029065765625No Hit
GGGGAT221760.1447511551012935No Hit
GGTGTG216270.14116762406997088No Hit
GGATGG215970.14097180270213905No Hit
TAGGGG215110.14041044811435444No Hit
GGGGTA213990.13967938167444893No Hit
GGGTCG213510.13936606748591798No Hit
GTGGAG210120.13715328602941823No Hit
GAGTGG207430.13539742109785943No Hit
GGGGCT205880.13438567736406162No Hit
AGGGTG205060.13385043229198793No Hit
GGCGGT204890.13373946685021657No Hit
AGTGGG204520.13349795382989063No Hit
GTCGGG203750.13299534565245558No Hit
GTGGCG197380.12883740527549292No Hit
AAGGGG197030.12860894701302245No Hit
GGCTGG196170.12804759242523786No Hit
GGGCGT193060.12601757757871446No Hit
TCGGGG190070.12406589127932385No Hit
CGTGGG189790.12388312466934746No Hit
GTGAGG189500.12369383068044336No Hit
GCGGGT188640.12313247609265876No Hit
GGGTGA187990.12270819646235645No Hit
GTGTGT186070.12145493970823269No Hit
GGAGTG185470.12106329697256903No Hit
GGGTTT183900.12003849848091575No Hit
GGTAGG183640.11986878662879483No Hit
TGAGGG183500.11977740332380661No Hit
GTGGGA181050.11817819548651329No Hit
AGAGGG180910.11808681218152511No Hit
CAGGGG180710.11795626460297055No Hit
GGGAGT179270.11701632203737773No Hit
GTGGGC176800.11540405944222895No Hit
GGGTGC175570.1146011918341184No Hit
ACGGGG173820.11345890052176603No Hit
GGGTAT173370.11316516847001828No Hit
GAGGTG173040.11294976496540325No Hit
GATGGG172350.11249937581939004No Hit
CGGGTG171880.11219258900978682No Hit
TGGAGG171060.11165734393771314No Hit
GGTTGT170980.11160512490629132No Hit
GAAGGG169670.11075003826675897No Hit
GTGCGG169360.1105476895199994No Hit
CCGGGG168640.11007771823720298No Hit
GCTGGG168610.11005813610041981No Hit
GGTGAG167800.10952941840727386No Hit
GCGTGG167680.10945108986014111No Hit
TGGGGA167100.1090725018823329No Hit
TGGGAG165530.10804770339067962No Hit
GGGATG165440.10798895698033008No Hit
TGGCGG164910.10764300589716048No Hit
GGCGTG164750.10753856783431684No Hit
GGTGGA163460.10669653595263995No Hit
TGGTGT163090.10645502293231401No Hit
GTTGGT162500.10606990757557808No Hit
AGGGAG161850.10564562794527577No Hit
GTGTTG161770.10559340891385394No Hit
TGCGGG159750.1042748783704529No Hit
CGAGGG158650.10355686668840285No Hit
TTGTGG158280.1033153536680769No Hit
GGCAGG158280.1033153536680769No Hit
GGGGTC158080.10318480608952235No Hit
TGGGCG158080.10318480608952235No Hit
TTGGGT157230.10262997888066548No Hit
GTGGTT157060.1025190134388941No Hit
GGGCAG156230.1019772409878927No Hit
GTTTGG155200.10130492095833672No Hit
TGTGGT154880.10109604483264942No Hit
CGGGCG154480.10083494967554031No Hit
GGGGAA153900.1004563616977321No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)