FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14139268
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG574370.4062232924646453No Hit
GGGGGT366340.25909403513675533No Hit
GGGTGG352760.24948957753682866No Hit
GTGGGG348300.2463352416829499No Hit
TGGGGG333950.23618620143560473No Hit
GGTGGG315020.2227979553114065No Hit
GGGGTG297430.2103574244437548No Hit
AGGGGG269080.19030688151607283No Hit
CGGGGG258530.1828453919962476No Hit
GGCGGG249910.17674889534592597No Hit
GGTGGT239020.16904694076100688No Hit
GGGTGT231080.163431374240873No Hit
GGGGGC230190.16280192157048018No Hit
GTGGGT228730.16176933629095933No Hit
GGGGTT223520.15808456279349115No Hit
GCGGGG221160.15641545234166296No Hit
GGGGGA220380.1558637971923299No Hit
TTGGGG218670.1546543993649459No Hit
GGGCGG215640.15251143128484446No Hit
GGGGCG214440.1516627310551013No Hit
GGGGAG212990.150637218277495No Hit
GTGTGG212270.15012799813964908No Hit
GGTTGG210800.14908834035821372No Hit
GGAGGG209940.14848010519356447No Hit
GAGGGG209620.14825378513229964No Hit
GGGTTG208230.1472707073661805No Hit
TGGTGG206020.1457076844430702No Hit
TGTGGG205370.14524797181862598No Hit
TGGGGT205300.1451984643052243No Hit
GTTGGG197740.13985165285784243No Hit
GGGAGG195700.13840886246727907No Hit
GTGGTG185340.13108175048382986No Hit
GGGGCT178010.1258976065804821No Hit
CTGGGG176220.1246316287377819No Hit
TGGGTG175390.12404461107887621No Hit
AGGGGT175140.12386779853101307No Hit
CGGGGT173070.12240379063470613No Hit
AGGTGG172280.12184506298345855No Hit
GGGTTT164960.11666799158202533No Hit
GTAGGG163790.11584050885802574No Hit
TGCGGG163500.11563540630250449No Hit
GGGCGT163060.11532421621826533No Hit
GGGTAG162730.11509082365508597No Hit
GGGGAT162590.1149918086282826No Hit
CGGTGG161010.11387435332578745No Hit
GGCTGG160480.11349951072431755No Hit
GAGGGT158640.11219817037204471No Hit
TAGGGG158210.11189405278972009No Hit
ATGGGG157590.11145555767101947No Hit
TCGGGG157540.11142019516144683No Hit
GGTGTG155540.11000569477854158No Hit
GCGGGT154580.10932673459474705No Hit
GGTTGT153760.1087467894377559No Hit
GTTGGT153280.10840730934585864No Hit
TTTGGG152690.10799003173290159No Hit
TTGGGT152120.1075868991237736No Hit
GGCGGT151010.10680185141126118No Hit
GTGGTT150190.10622190625427003No Hit
GGGTGC150020.10610167372172308No Hit
TTGTGG149680.1058612086566292No Hit
GGGTCG148550.10506201594028772No Hit
GGGGTA148520.10504079843454413No Hit
AGTGGG147850.10456694080627088No Hit
TGAGGG147730.10448207078329655No Hit
TGGTGT147380.10423453321628814No Hit
GTGTGT146950.1039304156339635No Hit
GTGGCG144820.10242397272616942No Hit
TGGGTT143420.10143382245813574No Hit
TGGGCG142150.1005356147149909No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)