FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5271026
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG158100.29994160529657793No Hit
GGGGGT104940.19908837482493918No Hit
GTGGGG90970.17258499578639908No Hit
GGTGGG87510.16602080885201476No Hit
GGGTGG85560.16232133933697157No Hit
GGGGTG85040.16133481413296008No Hit
GGGGGC84350.16002577107379093No Hit
GGCGGG81600.1548085704756531No Hit
AGGGGG78770.14943959676920585No Hit
TGGGGG76300.14475360205015114No Hit
GGGCGG76010.14420342453252932No Hit
CGGGGG71550.13574207374427671No Hit
GGGTGT70280.13333267564986398No Hit
GGTGGT66930.1269771767394052No Hit
GGGGCG66590.12633214102908996No Hit
GCGGGG66040.1252887009094624No Hit
GGGAGG64810.1229551893692044No Hit
GGGGAG63860.12115288370802951No Hit
GAGGGG62660.11887628708338756No Hit
GGGGGA61640.11694117995244188No Hit
GGAGGG60150.11411440581017814No Hit
GTGGTG59670.11320376716032136No Hit
ATGGGG55840.10593762960000577No Hit
GTTGGG55830.10591865796146709No Hit
GTGGGT55130.10459064326375928No Hit
GGGGTT54910.10417326721590826No Hit
GTCGGG53630.10174489748295681No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)