FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14043843
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1560471.1111417295109323No Hit
GGGGTG639010.4550107830171556No Hit
GTGGGG635580.4525684315895585No Hit
TGGGGG626890.44638066660243925No Hit
GGGGGT615550.438305953719363No Hit
GGGTGG584350.4160898124537564No Hit
GGTGGG576980.4108419611355667No Hit
AGGGGG549720.39143131976055273No Hit
GAGGGG540730.3850299380304949No Hit
CGGGGG510240.36331935638984286No Hit
GCGGGG503050.35819967511741624No Hit
GGGGCG501420.35703902414745026No Hit
GGGCGG485720.3458597479336674No Hit
GGGAGG482390.34348860208704984No Hit
GGCGGG465740.3316328728539617No Hit
GGGGAG452590.32226933895515636No Hit
GGGGGA449410.320005001480008No Hit
GGAGGG441140.31411629993300266No Hit
TGGTGG314740.22411244557490423No Hit
GGGGTT292710.20842585608511857No Hit
GTGTGG284610.2026582040257784No Hit
GTTGGG282220.20095639064036816No Hit
TGGGGT281810.20066444775835218No Hit
GTGGTG281420.2003867459925321No Hit
GTGGGT276160.19664133243301No Hit
TGTGGG274890.19573702155457023No Hit
TTGGGG271860.1935794924508911No Hit
GGGTGT270870.192874557199194No Hit
GGGTTG269290.19174950901971777No Hit
TGGGTG264660.18845269062036651No Hit
GGTTGG259070.184472298643612No Hit
AAGGGG257420.1832974065574501No Hit
GGTGTG256960.18296986088494438No Hit
TAGGGG253720.1806628000612083No Hit
ATGGGG253460.18047766555066158No Hit
GGGTAG250630.1784625476089415No Hit
GGGTCG248030.17661120250347428No Hit
AGGTGG247230.17604155785563821No Hit
GGTGGT245890.17508740307051282No Hit
CGGGGT245600.17488090688567223No Hit
GGGGGC245100.1745248789807747No Hit
GGTAGG237090.1688213119443161No Hit
TGAGGG235090.16739720032472594No Hit
GTGAGG232290.1654034440572997No Hit
GGGCTG229790.163623304532812No Hit
GTGGCG228220.1625053769114337No Hit
GAGGTG227520.16200693784457715No Hit
AGGGGT227160.16175059775305092No Hit
GGTCGG222860.15868875777093205No Hit
CGGTGG220230.15681605099117102No Hit
AGTGGG219710.15644578197007755No Hit
TCGGGG219670.15641729973768578No Hit
GAGGGT219180.15606839239088618No Hit
GTGGAG218650.15569100281169476No Hit
GTGCGG217060.1545588340741206No Hit
TGGGAG216990.15450899016743494No Hit
AGGGTG216860.15441642291216157No Hit
GGGGTA216820.15438794067976977No Hit
GTAGGG214700.1528783823630042No Hit
GGGATG214240.15255083669049846No Hit
TGCGGG213910.1523158582732661No Hit
TGGCGG213320.15189574534548697No Hit
CAGGGG212430.15126201567476938No Hit
CTGGGG210640.14998743577523616No Hit
GCGGGT209870.14943915280169395No Hit
GTCGGG209120.14890511094434764No Hit
GAGTGG208240.14827850183172797No Hit
GCTGGG207810.14797231783351608No Hit
GGATGG207260.1475806871381288No Hit
GCGGTG207150.1475023609990513No Hit
TGGAGG204680.1457435831488575No Hit
ACGGGG203800.1451169740362378No Hit
TGGGCG203290.1447538255732423No Hit
GATGGG202240.14400616697295748No Hit
AGCGGG202230.14399904641485953No Hit
GCGTGG201930.14378542967192098No Hit
GGCTGG199830.14229011247135132No Hit
GGGTGA197530.14065238410882264No Hit
GGCGGT197120.14036044122680666No Hit
GGGCCG196930.14022515062294558No Hit
GGAGTG196760.1401041011352804No Hit
CGGGTG196280.1397623143465788No Hit
GGGGCT195050.13888648570053083No Hit
GCCGGG194730.1386586278413964No Hit
GGGGAT194460.13846637277275173No Hit
GGTGAG192350.1369639350140841No Hit
GGCCGG192080.13677167994543943No Hit
GTGGGA191260.13618779418140747No Hit
AGGCGG190020.13530484497726156No Hit
GAAGGG189470.13491321428187428No Hit
GAGAGG188660.13433644907594025No Hit
GGGAGT186680.132926578572546No Hit
GGGCGT185480.1320721116007919No Hit
GGCGTG184520.13138853802338862No Hit
GGAGGT182280.12979353300944763No Hit
CGTGGG181750.12941614343025623No Hit
CCGGGG177990.1267388135854267No Hit
GCAGGG177800.12660352298156566No Hit
GAGGCG177430.12634006233194148No Hit
GGAAGG176460.12564936819644024No Hit
AGAGGG173920.12384074643956075No Hit
TGGGGA173190.12332094569841032No Hit
GGCAGG172670.12295067667731688No Hit
GGGACG172430.12277978328296606No Hit
CGCGGG171450.12208196858936689No Hit
GGTGGA170970.12174018180066526No Hit
GAGGAG170570.12145535947674722No Hit
GGGGCA170050.12108509045565376No Hit
GGGCAG169270.1205296869240136No Hit
CGGGCG168990.12033031129727097No Hit
AGGGAG167350.11916253976920704No Hit
GGGAAG165560.11788795986967385No Hit
GGTGCG164890.11741088247711115No Hit
TTGGTG164830.11736815912852343No Hit
GACGGG164010.11678427336449147No Hit
GGCGCG163190.1162003876004595No Hit
GGGGAA161980.11533880007060746No Hit
TGGTTG161380.1149115665847304No Hit
AGGAGG155350.11061787005166605No Hit
GGACGG154640.11011231042671155No Hit
GGTTGT153860.10955690689507139No Hit
CGGGAG153820.10952842466267958No Hit
CGGCGG153710.10945009852360213No Hit
CGAGGG153140.10904422671201894No Hit
GGCGGA152600.10865971657472957No Hit
GGTTTG151620.1079619018811304No Hit
GTGTGT150990.10751330672095949No Hit
GCGGAG150510.10717151993225786No Hit
TTGTGG149830.1066873219815972No Hit
GAGGGA149520.10646658468056072No Hit
GTTGTG149460.10642386133197301No Hit
AGGGCG149160.1062102445890345No Hit
CGGAGG149000.10609631565946728No Hit
GGAGAG148740.10591118114892056No Hit
GCGAGG148690.10587557835843081No Hit
GGAGGA147150.10477901241134639No Hit
GCGCGG146740.10448706952933039No Hit
TGGTGT146100.10403135381106154No Hit
CGGGGA144220.1026926888886468No Hit
GCGGGA144090.10260012163337343No Hit
GAGCGG143930.10248619270380621No Hit
TGTGGT143090.10188806582357834No Hit
GGCGAG142370.10137538564052588No Hit
TGTTGG141870.10101935773562834No Hit
AGGGGA141540.10078437931839597No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)