FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18609145
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1328930.7141273819941755No Hit
GGGGGT594960.31971377513582705No Hit
AGGGGG586020.3149096855336449No Hit
GTGGGG584720.3142111042715826No Hit
GGGTGG583990.31381882402442457No Hit
GGGGTG580140.311749948748317No Hit
TGGGGG578490.3108632879156995No Hit
CGGGGG568320.3053982329655661No Hit
GAGGGG538830.2895511857207841No Hit
GGGGCG536500.2882991131510878No Hit
GGGAGG508700.2733602215469867No Hit
GGTGGG498140.2676855922182346No Hit
GGCGGG487680.2620646999096412No Hit
GGGCGG485660.26097921210243674No Hit
GGGGGA472850.25409549982011537No Hit
GGGGAG455660.2448581060548456No Hit
GCGGGG440940.23694801668749424No Hit
GGGGGC439850.23636228316776509No Hit
GGAGGG424400.2280599135532557No Hit
GGGGTT289950.15581048994996813No Hit
AGGGGT288310.15492920281936648No Hit
GGGTGT286330.15386520982022547No Hit
TAGGGG285200.1532579814924329No Hit
TGGTGG284220.15273135869487825No Hit
TGGGGT280310.15063024120667554No Hit
GGTGTG272170.14625604776576248No Hit
GGGTTG271960.14614320002342934No Hit
GTGGTG271130.14569718275611265No Hit
TGGGTG268600.14433763614609912No Hit
GTGGGT268100.14406895104530595No Hit
TGTGGG264430.14209680240548395No Hit
AGGGTG264040.1418872280268653No Hit
AAGGGG262320.14096295128013672No Hit
GTGTGG260290.1398720897709164No Hit
GGGTAG259860.13964102058423425No Hit
TTGGGG252380.1356214914763682No Hit
AGGTGG251410.13510024238082943No Hit
ATGGGG249430.13403624938168843No Hit
GAGGGT248780.13368695875065728No Hit
GGTAGG245920.13215007997412026No Hit
GAGGTG245060.13168794160075598No Hit
GTTGGG243330.13075829115201154No Hit
GGGGTA243030.13059708009153564No Hit
CGGGTG240830.12941486564804563No Hit
GGTTGG237080.12739972739209673No Hit
GGGATG234000.1257446271712107No Hit
GTAGGG233870.1256747690450045No Hit
GGGGAT233410.12542757875227475No Hit
GTGAGG231660.1244871808994986No Hit
GTCGGG231640.12447643349546689No Hit
TGGAGG230520.12387457886969015No Hit
CAGGGG230500.12386383146565842No Hit
GGGCGT229630.12339631939027827No Hit
GAGTGG228940.12302553395118368No Hit
TGCGGG226860.12190780393188402No Hit
AGGGGA221560.11905974186347626No Hit
GGGGCT220050.11824831285908084No Hit
AGGGCG219750.11808710179860493No Hit
CGGTGG219630.11802261737441458No Hit
AGGCGG218380.11735090462243161No Hit
GGGTCG217520.11688876624906731No Hit
GGATGG216850.11652872821400445No Hit
GAAGGG216790.11649648600190927No Hit
GATGGG216400.11628691162329059No Hit
TGGGCG215860.11599673171443395No Hit
GGCGGT214390.11520679751810198No Hit
CCGGGG213230.1145834480842618No Hit
GGGAAG212790.11434700519556379No Hit
TGGCGG212380.11412668341291338No Hit
GGAAGG211940.11389024052421538No Hit
GGCAGG211910.11387411941816779No Hit
GTGGGA211550.1136806661455967No Hit
GTGCGG210500.113116427433931No Hit
GTGGCG210220.11296596377748681No Hit
GGGTGA210090.11289610565128058No Hit
GGAGGT210080.11289073194926473No Hit
GGGCCG209390.11251994651017014No Hit
GGGGTC209060.11234261434364663No Hit
AGAGGG207900.11171926490980645No Hit
GGCTGG206610.11102605734976001No Hit
TGAGGG205540.11045107123406261No Hit
GGGACG205420.11038658680987223No Hit
GGAGTG204310.10979010588611138No Hit
TCGGGG204200.10973099516393688No Hit
GGCCGG204120.10968800554780997No Hit
AGCGGG202850.10900554539179526No Hit
GGGCTG202290.1087046180789069No Hit
GCGGTG200170.1075653932515438No Hit
GGTCGG200110.10753315103944862No Hit
GGTGAG199330.10711400228221124No Hit
GGGGAA198280.10654976357054556No Hit
GGCGTG197670.10622196774757788No Hit
GAGAGG197530.10614673591935579No Hit
AGGGGC197450.10610374630322886No Hit
TGGGAG197360.10605538298508609No Hit
GGGTGC197260.10600164596492746No Hit
GGTGGT196670.1056845975459915No Hit
TGGGGC196190.10542665984923005No Hit
TGGGGA195860.10524932768270655No Hit
GGGGCA195840.10523858027867482No Hit
GGGAGA195380.10499138998594508No Hit
GAGGAG194960.1047656945012788No Hit
CGTGGG194890.10472807858716776No Hit
GGGCAG194860.10471195748112017No Hit
CGGGGT194510.10452387791056493No Hit
GCAGGG192120.10323956312877351No Hit
GCGTGG190860.10256247667477468No Hit
GTGGGC189500.10183165320061723No Hit
GACGGG189380.10176716877642686No Hit
GAGGCG189330.10174030026634753No Hit
CGGGCG188190.10112769823653908No Hit
AGGAGG187030.10050434880269887No Hit
GCCGGG186320.10012281595957256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)