FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11391802
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG500300.4391754702197247No Hit
GGGGGT324700.28502953264110453No Hit
GGGTGG298780.2622763281875861No Hit
GGGGTG290520.2550254999165189No Hit
TGGGGG280240.24600146666875003No Hit
GGTGGG272550.2392509982178412No Hit
GTGGGG267890.23516033723198487No Hit
AGGGGG250370.21978085644395856No Hit
GGGGGC232770.20433114971626087No Hit
GGGGTT212570.1865990999492442No Hit
TGGGGT212320.18637964388777123No Hit
GGTGGT210560.18483467321500144No Hit
CGGGGG210280.18458888242615173No Hit
GGGGGA204220.1792692674960467No Hit
GGTTGG201260.17667090772820665No Hit
GGAGGG201160.17658312530361744No Hit
GGGGAG199110.17478358559953902No Hit
GGGAGG196750.1727119203792341No Hit
GAGGGG196060.1721062216495687No Hit
GCGGGG192320.16882315896993294No Hit
GTGGGT191140.1677873263597805No Hit
TTGGGG190630.1673396359943756No Hit
GGGTGT189670.16649692471831937No Hit
GGGTTG188950.16586489126127718No Hit
GGGGCG183710.16126509221280355No Hit
GGGCGG181060.15893885796118998No Hit
GGCGGG175080.15368946897075633No Hit
TGGGTG171880.15088043138390222No Hit
TGTGGG169990.1492213435591665No Hit
GTTGGG167250.14681610512542265No Hit
GGGGTA160320.14073278310139167No Hit
TGGTGG158960.13953894212697868No Hit
GTGTGG157750.13847677478944947No Hit
AGGTGG157030.1378447413324073No Hit
GGTGTG152040.13346439834540663No Hit
AGGGGT150870.1324373439777131No Hit
GTGGTG148640.1304797959093741No Hit
GGGGAT146590.1286802562052957No Hit
GAGGGT143470.12594144455811293No Hit
TAGGGG142440.12503728558484425No Hit
GGTCGG142190.12481782952337128No Hit
GGGGTC139710.12264082539355933No Hit
GGGTAG138140.12126264132750902No Hit
GGGTTT136950.12021803047489764No Hit
GGTTGT136170.11953332756310195No Hit
GGGCTG133080.11682085064329593No Hit
GGGGCT132550.11635560379297323No Hit
GGGCGT131270.11523198875823158No Hit
CGGGGT130510.11456484233135372No Hit
CGGGTG129670.11382746996480451No Hit
GGTTTG129270.11347634026644775No Hit
GGAGGT127240.11169435704728717No Hit
TGTTGG126370.1109306499533612No Hit
TGGGTT124120.10895554540010438No Hit
GGGTCG123930.10878875879338493No Hit
TGGAGG123420.10834106842798005No Hit
ATGGGG123270.10820939479109627No Hit
TGGGGA122790.10778803915306814No Hit
AGGGTG121920.10702433205914216No Hit
GGTGTT121080.10628695969259296No Hit
CGTGGG120830.10606750363112No Hit
GTGGTT120780.10602361241882541No Hit
GGTTTT120640.10590071702440054No Hit
TCGGGG119630.1050141145360497No Hit
CGGTGG119540.10493511035391942No Hit
TTGGGT117890.10348670034819776No Hit
TGGTTG117160.10284588864869666No Hit
GGGTGC117130.1028195539213199No Hit
GGATGG116520.10228408113132584No Hit
GGTGGA116300.10209095979722962No Hit
GTGTGT116100.10191539494805123No Hit
TGGTGT115940.10177494306870853No Hit
GGGATG114900.10086200585298094No Hit
GTGCGG114700.10068644100380256No Hit
TGAGGG114510.10051965439708309No Hit
CTGGGG113940.1000192945769247No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)