FastQCFastQC Report
Wed 8 May 2024
EGAF00005482969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5057817
Total Bases30.3 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG179920.3557265911360573No Hit
GGTGGG122990.24316814942098539No Hit
TGGGGG103080.20380334045300574No Hit
GGGTGG96390.19057629012674837No Hit
GGGGGT94280.18640452985942355No Hit
GGGGTG90840.17960317662738687No Hit
GTGGGG89000.17596524350327425No Hit
GGCGGG81760.161650767514918No Hit
TGGTGG78590.1553832414260935No Hit
GGGCGG77200.15263502020733452No Hit
CGGGGG76180.15061833988853293No Hit
TGTGGG74870.14802828967517015No Hit
GGGGGC74790.14787011866977393No Hit
GGTTGG74650.1475933194103306No Hit
GGTGGT72810.14395538628621793No Hit
AGGGGG70990.14035699591345435No Hit
GGAGGG69790.13798443083251133No Hit
GGGGCG68470.135374609243474No Hit
GTTGGG67500.13345678580304507No Hit
GGGTTG67220.13290318728415837No Hit
GAGGGG66700.13187507574908305No Hit
GTGGTG66560.1315982764896397No Hit
GCGGGG64890.12829645675199397No Hit
TGGGTG64450.12742651622231488No Hit
GGGGAG64390.12730788796826772No Hit
GGGGGA63440.12542960727918784No Hit
GGGAGG62930.12442126711978704No Hit
GGTGTG62390.12335361283336269No Hit
CGGTGG61700.12198938791182046No Hit
GGTGGC59440.11752105700937776No Hit
GTGTGG58900.1164534027229534No Hit
AGGTGG58620.1158998042040667No Hit
GGTGTT58460.11558346219327428No Hit
GGTTGT56980.11265729859344456No Hit
GGGCTG56100.11091741753408635No Hit
TGGTTG55830.11038359039087417No Hit
TGTGGT54190.10714108478025203No Hit
GGGTGT54110.10698291377485582No Hit
GGGCGT53420.10561868885331359No Hit
GGGGTA53320.10542097509656835No Hit
TGTTGG53050.10488714795335616No Hit
GGGTAG52770.10433354943446946No Hit
GTTGGT52520.10383926504260632No Hit
GGGGTT51640.10209938398324811No Hit
GGTGGA51350.10152601408868689No Hit
GTGGGT51210.10124921482924353No Hit
TGTGTG50630.10010247504012107No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)