FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15163288
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG895500.5905711215140146No Hit
GGGGGT480960.3171871430523512No Hit
GGGGTG452990.29874127563889835No Hit
TGGGGG445170.293584082818977No Hit
GGGTGG437720.2886709004010212No Hit
GGTGGG433290.2857493704531629No Hit
GTGGGG405820.26763324682615014No Hit
CGGGGG364630.24046895369922408No Hit
GGGGCG342190.2256700525637975No Hit
GCGGGG340960.22485888284915515No Hit
GGCGGG329510.21730775013967946No Hit
GGGGGC323690.21346953246551803No Hit
GGAGGG322280.21253965498775726No Hit
GGGGGA313330.20663724121048155No Hit
GGGAGG308750.20361678812669126No Hit
GGGGAG302740.19965326781368262No Hit
GAGGGG302690.19962029343503865No Hit
GGGCGG280420.18493350518700166No Hit
GGGTGT265810.17529839174722528No Hit
GGGGTT262150.17288466723048457No Hit
TGGGGT258920.17075452237008226No Hit
GTGTGG254620.1679187258066984No Hit
GTGGGT249430.16449598530345133No Hit
TGTGGG247320.1631044665246746No Hit
TGGTGG246590.1626230405964722No Hit
GGTTGG245600.16197014789932104No Hit
TTGGGG243840.1608094497710523No Hit
GTGGTG242350.15982681328746115No Hit
TGGGTG239040.1576439094212284No Hit
GGTGGT238850.15751860678238125No Hit
GGGTTG237210.15643704716285808No Hit
GTTGGG233170.153772717368423No Hit
GGTGTG224620.14813409862029925No Hit
TCGGGG209120.13791204124065967No Hit
GCGGGT202580.13359899251402466No Hit
GGAGGT202010.13322308459748308No Hit
TGCGGG201630.1329724793197887No Hit
GTGGCG201030.13257678677606072No Hit
CTGGGG198580.1309610422225048No Hit
GGGGTA197980.1305653496787768No Hit
GTCGGG195320.12881111273491608No Hit
GGTCGG194680.1283890406882729No Hit
GGGCGT194060.1279801583930873No Hit
CGGGGT190880.125882987911329No Hit
GGGAGT190460.1256060031307194No Hit
TAGGGG189780.12515755158116101No Hit
GTAGGG188600.12437935624516265No Hit
CGGTGG188280.12416832022184106No Hit
GAGGGT187080.1233769351343851No Hit
TGGGCG186950.1232912017499107No Hit
GGGTCG186000.12266468855567474No Hit
TGGAGG185080.12205795998862516No Hit
TGGGGC183390.120943425990458No Hit
GGTAGG181570.11974315860781647No Hit
GGTGGA179660.11848353734361572No Hit
GGTGGC179270.11822633719019253No Hit
CGTGGG178460.11769215225615975No Hit
GGGGAT176150.11616873596280702No Hit
TGGGGA175100.11547627401128303No Hit
GGCTGG173600.11448704265196309No Hit
GGAGTG173190.11421665274708229No Hit
TGAGGG172680.11388031408491352No Hit
GTGAGG172470.11374182169460872No Hit
GGGTAG171420.11304935974308473No Hit
GGCGGT170680.11256133893915357No Hit
GGGCCG170270.11229094903427278No Hit
GGGGTC169730.1119348257449176No Hit
GCGGTG168820.11133469205359683No Hit
GTGCGG168790.11131490742641041No Hit
GCGTGG168340.11101813801861443No Hit
GGGGCT167560.11050373771176805No Hit
TGGCGG165260.10898691629414411No Hit
GGGCTG164640.10857803399895855No Hit
TGTTGG164580.10853846474458573No Hit
CGGGTG162440.10712716133862261No Hit
GCTGGG161730.10665892516187783No Hit
GGGTGA161600.10657319177740342No Hit
GGGTGC161280.10636215575408182No Hit
TTGGTG160510.10585435032296425No Hit
GAGGTG160060.10555758091516827No Hit
CCGGGG159790.10537951927049066No Hit
GGGATG159400.10512231911706747No Hit
TTGTGG158700.1046606778160515No Hit
GGTTGT158470.10450899567428912No Hit
GGCGTG157680.10398800049171393No Hit
TGTGGT157670.10398140561598514No Hit
CGCGGG157580.10392205173442594No Hit
TGGGAG156840.10343403093049476No Hit
GAGTGG156500.10320980515571557No Hit
GGTGTT156350.10311088201978356No Hit
GTTTGG156190.10300536400812278No Hit
GTGGGA156080.10293282037510598No Hit
CGGGAG155830.10276794848188599No Hit
GCCGGG154500.10189083000995564No Hit
TTTGGG152300.10043995734961969No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)