FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7281874
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG333980.4586456728034569No Hit
GGGGGT200560.27542360661554977No Hit
GGTGGG194420.266991711199617No Hit
TGGGGG187130.25698055198428316No Hit
GGGTGG173820.23870229009730187No Hit
GGGGTG157080.2157137022694982No Hit
GTGGGG136760.1878087975705155No Hit
GAGGGG131300.18031072770553294No Hit
CGGGGG125760.17270279601102684No Hit
GGGCGG124790.17137072132805375No Hit
GGGTGT122820.16866537377603624No Hit
GGTGGT122110.1676903500390147No Hit
GGGGCG119670.1643395642385463No Hit
GGGTTG119650.1643120987811654No Hit
TGGGTG117820.1617990094308141No Hit
GGGGGA113590.1559900651947562No Hit
GGCGGG113490.15585273790785173No Hit
TGGGGT113320.1556192815201142No Hit
GGAGGG112940.1550974378298773No Hit
GCGGGG111060.1525156848360738No Hit
TGGTGG109060.14976913909798495No Hit
GGGGTT108490.14898637356262961No Hit
GTTGGG107990.1482997371281074No Hit
GTGTGG107280.14732471339108588No Hit
GTGGGT107270.14731098066239542No Hit
TTGGGG106340.14603383689418412No Hit
GGGAGG105980.1455394586613281No Hit
GGGGGC105450.14481162404073455No Hit
GGCGGT99610.1367917104855151No Hit
GGGGAG99590.13676424502813425No Hit
AGGGGG97380.13372931198754606No Hit
TGTTGG97320.1336469156154034No Hit
GTGGTG96430.13242470276195387No Hit
GGGGCT95070.13055705166005346No Hit
GGTTGG94380.12960949338041278No Hit
GGTTGT92710.1273161276891086No Hit
GGGCGT92040.12639603486684883No Hit
TGTGGG91740.12598405300613552No Hit
GTTGGT87940.1207656161037667No Hit
GGTGTG87740.12049096152995781No Hit
TGAGGG87220.1197768596380547No Hit
TTTTTT85850.11789547580746385No Hit
GGTGTT85220.11703031389996585No Hit
GTTTGG83740.11499787005378011No Hit
GGGGTA83640.11486054276687568No Hit
TGGTTG81810.11234745341652437No Hit
TGCGGG81700.11219639340092949No Hit
GGTTTG81200.11150975696640726No Hit
ATGGGG78890.10833749663891465No Hit
GGATGG78670.10803537660772487No Hit
GGAGGT77700.10670330192475179No Hit
TTTGGG76580.10516523631142202No Hit
GCCGGG76330.10482191809416093No Hit
TTGTGG76180.10461592716380426No Hit
ATTGGG76140.10456099624904248No Hit
TTGGGT76100.10450606533428071No Hit
TGGGTT75990.10435500531868581No Hit
AGGTGG75790.10408035074487693No Hit
GGGTAG75730.10399795437273428No Hit
AGTGGG75600.10381942889975848No Hit
TGGAGG75540.10373703252761583No Hit
GGGAGT75320.10343491249642607No Hit
GATGGT75290.10339371431035473No Hit
TTTGGT75170.1032289215660694No Hit
GGTGGA74960.10294053426357005No Hit
TCGGGG74830.10276200879059429No Hit
GAGTGG73490.10092182314607476No Hit
GGGTTT73340.10071583221571809No Hit
GGGTGC73090.100372513998457No Hit
TGGTGT72970.10020772125417166No Hit
AGGGGT72850.10004292850988633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)