FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11930454
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1125890.9437109434393696No Hit
GGGGGT486680.40793082979071876No Hit
TGGGGG446220.374017619111561No Hit
GGGGTG431140.3613776977808221No Hit
GTGGGG426150.3571951243431306No Hit
GCGGGG418730.35097574660612246No Hit
GGGGCG409460.34320571539021066No Hit
CGGGGG406020.3403223381105195No Hit
GGTGGG405330.3397439862724419No Hit
GGGTGG403150.33791672974054465No Hit
GAGGGG388530.3256623763018574No Hit
GGGCGG383510.3214546571320756No Hit
GGGGGC381430.3197112197071461No Hit
GGGGGA371210.3111449069750405No Hit
AGGGGG370880.3108683039220469No Hit
GGCGGG355990.29838763889454667No Hit
GGAGGG352650.29558808072182335No Hit
GGGGAG352110.2951354575441974No Hit
GGGAGG342400.2869966222576274No Hit
TTGGGG241580.2024901986127267No Hit
GTGTGG229140.19206310170593674No Hit
GGGGTT228260.19132549356462042No Hit
GGTGGT211460.1772438835940359No Hit
TGTGGG210850.17673258704153252No Hit
CTGGGG207260.17372348110138977No Hit
GTGGGT207130.17361451626233168No Hit
GGCGGT204180.1711418526067826No Hit
GGGCGT202620.16983427453808547No Hit
GTTGGG199870.16752924909647193No Hit
GGTGTG195560.16391664558616126No Hit
GGGTGT193950.16256715796398025No Hit
GGCGGC193390.16209777096496075No Hit
TCGGGG190610.1597675997912569No Hit
TGGGGT189830.15911381075690834No Hit
GCGGGT189650.15896293636436634No Hit
GTCGGG188640.1581163633839919No Hit
GCCGGG187690.15732008186779817No Hit
TGGTGG187080.1568087853152948No Hit
CCGGGG185240.15526651374708791No Hit
GGGCCG181630.1522406439855516No Hit
GGGGCA181530.15215682487858384No Hit
TGGGTG180470.15126834234472553No Hit
GTGCGG178490.14960872402676378No Hit
GGGGTA177820.14904713601007974No Hit
GGGGAT176380.14784014086974392No Hit
GGGGCC175010.14669181910428555No Hit
GTGGTG174780.1464990351582597No Hit
GTGGGA174350.1461386129982983No Hit
CGGGGT171940.14411857252037516No Hit
GTGGGC168920.14158723548994867No Hit
GGCCGG167760.1406149338491226No Hit
GAGGGT167600.14048082327797418No Hit
AGGGGT166120.13924030049485125No Hit
GGGGAC165580.1387876773172253No Hit
TGGCGG165300.13855298381771555No Hit
GGGTTG164950.1382596169433284No Hit
GTGGCG163960.13742980778434752No Hit
GGAGTG163470.13701909416020547No Hit
GGCGCG163430.13698556651741836No Hit
TGCGGG162980.13660838053606342No Hit
GGTTGG162510.1362144307333149No Hit
AGTGGG162190.13594620959101808No Hit
GGGGTC161300.135200219539005No Hit
GCGGTG160160.13424468171957243No Hit
GAAGGG159780.13392616911309493No Hit
ATGGGG159060.13332267154292704No Hit
GGGGCT158380.13275270161554623No Hit
GCGGGC158380.13275270161554623No Hit
GGGATG158340.13271917397275912No Hit
CGCGGG157760.13223302315234609No Hit
GGAGGT157490.13200671156353314No Hit
CGTGGG156680.13132777679709423No Hit
GAGGGC155650.13046443999532625No Hit
TAGGGG155020.12993637962142932No Hit
CGGGGA154790.12974359567540347No Hit
GGGAGT154560.1295508117293776No Hit
GGTCGG153810.12892216842711937No Hit
GTGAGG153250.12845278142809988No Hit
GAGGTG153120.1283438165890418No Hit
GACGGG152930.12818456028580305No Hit
GATGGG151990.12739666068030606No Hit
TGGGAG151860.12728769584124797No Hit
GGGTGC150520.1261645198078799No Hit
GCGGCG150310.1259884996832476No Hit
AAGGGG150060.12577895191582816No Hit
GGTGGA149200.1250581075959054No Hit
GGGCTG148510.12447975575782783No Hit
GGGGAA147920.12398522302671802No Hit
GCGAGG147880.12395169538393092No Hit
GAGGAG147540.12366671042024051No Hit
GGTGAG147080.1232811425281888No Hit
ACGGGG146990.1232057053319178No Hit
GAGTGG146310.122635735404537No Hit
TGGGGC145840.1222417856017885No Hit
GGGAGA144150.12082524269403326No Hit
GCGTGG143980.12068275021218806No Hit
CAGGGG143180.12001219735644594No Hit
GGGTCG142680.11959310182160711No Hit
TGAGGG142680.11959310182160711No Hit
TGGGCG142340.11930811685791673No Hit
GGTGCG141700.11877167457332302No Hit
GGGTAG141530.11862918209147784No Hit
GCTGGG141350.11847830769893584No Hit
GGGCGC140950.11814303127106479No Hit
TGGAGG140790.11800892069991638No Hit
GCAGGG140780.11800053878921958No Hit
CGGGTG140620.11786642821807115No Hit
GGCGTG140490.11775746337901306No Hit
GGACGG139480.11691089039863865No Hit
TGGGGA138970.11648341295310305No Hit
GTGGAG138270.11589667920432868No Hit
GTAGGG137780.11548596558018664No Hit
GGGTGA137480.11523450825928333No Hit
GGGACG136550.11445499056448313No Hit
GGTGGC134380.11263611594328263No Hit
CGAGGG134360.11261935212188907No Hit
CGGGGC134340.11260258830049553No Hit
AGGCGG134220.1125020053721342No Hit
AGGGTG134160.11245171390795354No Hit
GGATGG133420.11183145251639208No Hit
GCGCGG133180.11163028665966945No Hit
GGCTGG132900.1113955931601597No Hit
CGGTGG132150.11076694985790146No Hit
GGCAGG131850.11051549253699817No Hit
GGGCGA130440.10933364312875268No Hit
AGGGGC130120.10906542198645583No Hit
GAGGCG129600.10862956263022346No Hit
GGGAAG129300.10837810530932017No Hit
GAGCGG129120.10822723091677819No Hit
GGAAGG128930.10806797461353944No Hit
GGAGAG128310.1075482961503393No Hit
CGGGCG128100.10737227602570698No Hit
CGGCGG127750.1070789091513198No Hit
GGCGAG125820.10546120038684194No Hit
GGCGGA125600.10527679835151285No Hit
AGGTGG124690.1045140444781062No Hit
GGTAGG124170.10407818512187382No Hit
GGGCAG123670.10365908958703499No Hit
AGGGGA123340.10338248653404138No Hit
AGCGGG123160.10323161214149938No Hit
GCGGGA122910.10302206437407999No Hit
AGAGGG122120.10235989342903463No Hit
GAGAGG121220.10160552146632476No Hit
GGAGGC120170.10072542084316322No Hit
CGGGAG120070.10064160173619545No Hit
GCGGAG119660.10029794339762761No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)