FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10872401
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG639140.5878554332203163No Hit
GGGGGT371700.34187480759769623No Hit
GGTGGG332200.3055442859401525No Hit
TGGGGG330350.3038427298625207No Hit
GGGTGG321310.29552809908317396No Hit
GTGGGG306370.2817868840562448No Hit
GGGGTG298940.27495306694445876No Hit
CGGGGG292600.26912178827841243No Hit
GGGGGA281420.25883887100926467No Hit
AGGGGG278430.2560887884837949No Hit
GCGGGG270550.2488410793531254No Hit
GGGGCG249690.22965488487777444No Hit
GAGGGG248630.22867993923329355No Hit
GGCGGG248320.228394813620285No Hit
GGGCGG238870.2197030812237334No Hit
GGGAGG231740.21314519212453625No Hit
GGGGGC225800.20768181747527525No Hit
GGGGAG223270.20535482456910853No Hit
GGAGGG204280.18788858137222864No Hit
TGGGTG170040.156395997535411No Hit
TGGTGG169060.15549463269428712No Hit
GGGTTG168740.15520030948085892No Hit
GGTTGG164950.15171441892181864No Hit
TTGGGG163550.15042675486307025No Hit
GGGTGT162570.1495253900219464No Hit
GGCGGT162180.14916668360558077No Hit
AGGGGT158440.14572678104863865No Hit
CGGTGG157950.14527609862807672No Hit
GTTGGG157470.14483461380793441No Hit
GAGGTG156760.14418158417814061No Hit
TGTGGG155710.1432158361340793No Hit
GGTGGT153710.14137631605015305No Hit
GGGGTT152230.1400150711880476No Hit
GGTGTG151570.13940802956035192No Hit
TGGGGT148230.1363360310201951No Hit
GGGATG148010.1361336838109632No Hit
TCGGGG147980.1361060910097043No Hit
GTGAGG141300.12996209392939057No Hit
CGGGGT140340.12907912428910595No Hit
GTGGTG140080.12883998667819554No Hit
GGAGGT139340.12815936424714283No Hit
CGCGGG137900.12683490978671594No Hit
GGGGTA136470.12551965292670864No Hit
GGGTGC136230.1252989105166375No Hit
TGCGGG135890.12498619210237004No Hit
TAGGGG135630.12474705449145962No Hit
AGGTGG135540.12466427608768292No Hit
GAGGGT133460.1227511752003996No Hit
GGGGCA132560.12192339116263279No Hit
TGGGGA131830.12125196633199971No Hit
GGTCGG131760.1211875831290623No Hit
ATGGGG131390.12084727191353592No Hit
GTGGGT130960.12045177509549178No Hit
GCGGGT130850.12035060149087586No Hit
GTGTGG130690.12020343988416174No Hit
GGGCTG129930.11950442225226977No Hit
GTCGGG129550.11915491343632376No Hit
GGGTCG126570.11641402851127362No Hit
TGGCGG125990.11588056768693503No Hit
TGGAGG125360.11530111886049825No Hit
GGGAGT125160.11511716685210562No Hit
CGGGTG124770.11475846043573999No Hit
CTGGGG124440.11445493962189217No Hit
GTAGGG123720.11379271239167872No Hit
GATGGG123640.11371913158832166No Hit
TGAGGG123380.11347999397741124No Hit
GCGTGG123000.11313048516146526No Hit
GAGCGG122070.11227510832243955No Hit
GGTGCG121690.11192559950649356No Hit
GGGGCT121320.11158528829096719No Hit
GGGTAG121030.11131855787879788No Hit
AAGGGG120890.11118979147292304No Hit
AGTGGG120880.11118059387250341No Hit
CGTGGG120840.11114380347082488No Hit
CAGGGG119410.10982854661081762No Hit
ACGGGG119240.10967218740368387No Hit
TGGGGC119030.10947903779487161No Hit
TGGGCG118460.10895477457095264No Hit
GGGGTC118430.10892718176969375No Hit
GGGTTT118290.10879841536381889No Hit
GGCCGG118230.10874322976130112No Hit
GGGGAT117480.10805340972982877No Hit
GTGCGG115820.10652660806016996No Hit
GGTAGG115330.10607592563960802No Hit
GGGCAG114970.10574481202450131No Hit
GGCAGG114890.10567123122114425No Hit
GTGGAG113420.10431918395945845No Hit
TGGTGT113390.10429159115819955No Hit
GCCGGG113070.10399726794477135No Hit
GTGGCG112560.10352819032337014No Hit
GGAGTG112300.10328905271245975No Hit
GGTGAG112140.10314189110574563No Hit
TTGTGG111950.10296713669777265No Hit
GGGGAA111940.10295793909735301No Hit
AGGGTG111910.10293034629609411No Hit
GGGGCC111760.10279238228979966No Hit
GGGCGT110880.1019829934528721No Hit
GCGGTG110760.10187262224783651No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)