FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6435142
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG140030.21760203582143176No Hit
GGGGGT116390.18086624972689025No Hit
GGTGGG104020.16164367468503416No Hit
GGGGTG95630.14860588934945024No Hit
TGGGGG94120.14625939878249772No Hit
GGGGTT92900.14436355872178114No Hit
GTGGGG90660.14088267205292437No Hit
GGGTGG88430.1374173250566965No Hit
GGTTGG83110.12915021921816178No Hit
TGGGTT82710.1285286323130088No Hit
TGGGTG80600.12524976138832677No Hit
GGTGTT78770.12240600129725188No Hit
GGGTTG78440.12189319210050066No Hit
GTGTGG77470.12038584385550466No Hit
GGTTTT74270.11541314861428077No Hit
ATGGGG73990.11497803778067368No Hit
GGGAGG73830.1147294030186125No Hit
GGGGAG73710.1145429269470666No Hit
GGGGGC72980.1134085308451624No Hit
TGGGGT71750.11149715111181696No Hit
GTGGTG71400.11095326256980809No Hit
TGGTGG71310.11081340551614867No Hit
GGTGGT71260.11073570715300456No Hit
GGGGCG70390.10938375563429681No Hit
TGTGGG69940.10868447036599971No Hit
TTGGGG66920.10399148923209464No Hit
GGAGGG66730.10369623545214697No Hit
TTGTGG66260.10296587083859221No Hit
GGGTGC64880.10082139601581441No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)