FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24491492
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1284190.5243412692048324No Hit
CGGGGG587240.23977306078372032No Hit
GGGGTG580840.23715990842860857No Hit
GGGGGT578620.23625347120542922No Hit
GTGGGG571810.23347291377756813No Hit
GGTGGG569300.23244806808829774No Hit
TGGGGG568650.23218266980223173No Hit
GGGGCG559210.22832827007844195No Hit
GCGGGG550720.22486176015736403No Hit
AGGGGG549530.22437587714133544No Hit
GGGGGC543750.22201587392062516No Hit
GGGTGG543270.2218198874939918No Hit
GAGGGG535740.21874535042618065No Hit
GGGCGG493500.20149854488244323No Hit
GGCGGG485900.1983954264607481No Hit
GGGAGG484940.19800345360748134No Hit
GGAGGG476580.19459002334361664No Hit
GGGGAG463740.18934738643117374No Hit
GGGGGA446980.1825041937012249No Hit
GGGGTT336630.13744773082832193No Hit
GGTTGG330440.1349203225348623No Hit
GGGCCG315750.12892232126976994No Hit
GGGTGT310350.1267174739701444No Hit
CGGGGT304670.12439830125498275No Hit
CCGGGG296840.12120127267052576No Hit
GGGTTG296560.12108694725498961No Hit
TGTGGG296480.1210542828505507No Hit
GTGGGT295510.1206582269467291No Hit
GGTGGT295500.12065414389617424No Hit
GGCCGG295230.12054390153119295No Hit
TGGGTG291620.11906992028088775No Hit
GGGGCT291400.11898009316868077No Hit
GGGTCG290520.1186207847198529No Hit
GTGGCG283380.11570548662368141No Hit
GGGTAG283030.11556257985426122No Hit
AGGTGG282510.11535026122540841No Hit
GTGGTG282020.11515019174822017No Hit
GTCGGG281890.11509711209100695No Hit
TGAGGG281000.11473372059162422No Hit
TAGGGG280760.11463572737830754No Hit
GGTAGG280210.11441115959779014No Hit
GTAGGG278210.1135945494868177No Hit
CTGGGG276910.11306375291468564No Hit
ATGGGG274970.1122716411070424No Hit
GGGGAT273940.11185108689989161No Hit
GTTGGG272550.11128354287276578No Hit
AGGGGT272470.11125087846832687No Hit
GGTGTG272430.11123454626610742No Hit
TTGGGG271300.11077316155340801No Hit
AGTGGG270630.11049959716623226No Hit
GGCAGG269140.10989122263355781No Hit
CGGGGC267930.10939717351641949No Hit
TGGTGG267920.10939309046586462No Hit
TCGGGG267770.1093318447075417No Hit
CAGGGG267400.10918077183701182No Hit
GGGCGT266310.10873571932653184No Hit
CGCGGG266000.10860914475933112No Hit
CGGGTG265480.1083968261304783No Hit
GCCGGG264540.10801301937832125No Hit
GCGTGG261370.10671869235242996No Hit
GGGGTC259990.10615523137585901No Hit
GGGGTA259900.10611848392086526No Hit
AAGGGG259250.10585308563479921No Hit
TGCGGG258560.10557135514651375No Hit
GTGCGG256710.10481599079386425No Hit
TGGGGT255460.1043056094745065No Hit
CGGGCG254570.10394221797512376No Hit
TGGGCG254100.10375031459904525No Hit
GGGCAG252460.10308069430804787No Hit
GCAGGG252020.10290104008363395No Hit
GGGTGA251650.10274996721310403No Hit
GGCTGG251550.10270913670755541No Hit
GTGTGG251030.1024968180787026No Hit
GGCGGT251020.10249273502814774No Hit
GTGAGG250570.10230899775317895No Hit
CGTGGG249090.10170470627105935No Hit
GGTGGA248990.10166387576551073No Hit
GGTCGG248770.10157404865330376No Hit
GGTGAG248390.101418892732219No Hit
GGTGGC247840.1011943249517016No Hit
GGGGCC245540.10025522332408332No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)