FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20694830
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG619420.29931147054602525No Hit
GGGGGT417700.2018378503230034No Hit
GGGTGG387180.187090205621404No Hit
GGGGTG380340.18378503230033783No Hit
GTGGGG342050.16528282667700098No Hit
GGGGGC340890.16472230020734646No Hit
GGTGGG328900.15892858264600385No Hit
TGGGGG322990.15607279692560894No Hit
CGGGGG314180.1518156950310778No Hit
GGGGCG306230.14797415586404913No Hit
GGGCGG302270.1460606344676424No Hit
AGGGGG299050.14450469030187732No Hit
GCGGGG291060.14064382263589506No Hit
GGGGAG290870.14055201226586544No Hit
GGAGGG286310.13834856338515464No Hit
GAGGGG283550.13701489695735602No Hit
GGGGTT273380.13210062609840234No Hit
GTGGGT268810.12989234509295317No Hit
GGCGGG262070.126635493019271No Hit
TGTGGG258730.1250215633566451No Hit
GGGGGA257450.12440305139012979No Hit
GGTGGT245690.1187204726977704No Hit
GGGAGG244600.11819377110128472No Hit
GGTTGG243980.11789417936750386No Hit
GGGTGT237300.1146663200422521No Hit
GGGGCT230730.11149161408912274No Hit
TGGTGG227570.10996466267178809No Hit
GGGTTG225020.10873247086349586No Hit
TGGGGT221790.10717169457299237No Hit
GTGTGT219210.10592500639048497No Hit
GTGGTG219170.10590567789153137No Hit
TCGGGG217140.10492475656963599No Hit
TGGGTG216780.10475080007905356No Hit
GGTGTG215400.10408396686515424No Hit
GGGCTG207330.10018444220126477No Hit
GCGTGG207250.10014578520335755No Hit
GTGGCG207170.10010712820545035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)