FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9931861
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG332050.3343280780913063No Hit
GGGCGG171810.17298872789299005No Hit
GGGTGG167250.16839744333916876No Hit
GGGGGT166060.16719927916832505No Hit
GGTGGG164130.16525603811813314No Hit
CGGGGG161440.1625475829756377No Hit
GGGGCG159120.16021166627281633No Hit
GGGGGC158110.15919473701857084No Hit
GCGGGG154930.15599292015866917No Hit
GGGGTG154010.15506660836272276No Hit
TGGGGG151670.15271055444694603No Hit
GGGGGA145050.14604513695872304No Hit
GTGGGG144580.14557191245427217No Hit
GGGGAG143500.1444845029546829No Hit
GAGGGG141910.14288359452473207No Hit
GGCGGG133940.1348589151620225No Hit
AGGGGG132970.13388226033368772No Hit
GGGAGG132340.133247938125594No Hit
GGAGGG127680.12855596750699594No Hit
CGGGGT125340.1261999135912192No Hit
GGGCCG111670.11243612853623305No Hit
GGCCGG107910.10865033250062602No Hit
TGGTGG106390.10711990431601894No Hit
CAGGGG104750.10546865285367968No Hit
GGGGTT103770.1044819294188672No Hit
GGGGCA103310.104018773520894No Hit
GGTGGT102010.10270985467879584No Hit
GTGGGC100100.1007867508415593No Hit
GCGGGT99740.10042428100836288No Hit
GGGGTA99710.10039407518892984No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)