FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14374114
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1030640.7170111493480572No Hit
CGGGGG488240.33966615264078187No Hit
GCGGGG475790.3310047492318483No Hit
GGGCGG447600.3113931056898533No Hit
GGGGCG438090.3047770457365233No Hit
GGCGGG435370.3028847551925635No Hit
AGGGGG432630.3009785507475452No Hit
GAGGGG407880.283760098187617No Hit
GGGGGT407170.28326615470003924No Hit
GTGGGG398340.2771231673826992No Hit
GGGTGG398110.27696315752052614No Hit
GGGGGC397110.2762674624675997No Hit
TGGGGG383390.26672252634144966No Hit
GGGGTG375630.26132393273074084No Hit
GGGAGG366290.2548261409364083No Hit
GGAGGG357190.24849531595477814No Hit
GGTGGG352410.24516989360178998No Hit
GGGGAG350660.24395242725916882No Hit
GGGGGA310540.21604114173576194No Hit
ACGGGG232880.1620134639254983No Hit
AAGGGG223860.15573829454810223No Hit
CGGGGC220180.1531781367533331No Hit
GGGGCC216770.1508058166228541No Hit
GGCCGG215120.14965791978552556No Hit
GCCGGG213220.14833609918496543No Hit
AGGGCG212880.14809956286697046No Hit
CGGGCG212030.14750822207198303No Hit
CCGGGG210370.1463533682841252No Hit
GGGCCG206800.143869736945178No Hit
CAGGGG202590.14094086077235787No Hit
AGGCGG201630.14027299352154854No Hit
ATGGGG198850.13833896127441314No Hit
GGCGGC197300.13726063394237725No Hit
TAGGGG196400.13663450839474348No Hit
CGGCGG195670.1361266510061072No Hit
GCGGGC194770.1355005254584735No Hit
AGGGGT194600.13538225729947598No Hit
GTGGCG193560.13465873444443255No Hit
GGGACG192540.13394912549044763No Hit
GGCTGG192330.1338030295293331No Hit
AGGGGC191460.13319777483328712No Hit
AGCGGG190760.13271078829623864No Hit
AGGTGG189980.13216814615495606No Hit
GTTGGG188670.13125678563562249No Hit
CGCGGG188140.1308880672575715No Hit
CTGGGG187540.13047065022581567No Hit
CGGGGT186380.12966364396442104No Hit
GGGCAG185530.1290723031694336No Hit
GGGCGC185270.12889142245567276No Hit
TTGGGG183860.12791049243104652No Hit
CGGTGG183440.12761830050881745No Hit
GCGGCG183390.1275835157561711No Hit
GCGGGT182070.1266651982863083No Hit
TGGGTG178520.1241954808484196No Hit
GGCGCG178450.12414678219471476No Hit
GCGAGG178000.12383371942089787No Hit
GCGCGG177690.12361805395449069No Hit
GGTGGC177540.12351369969655172No Hit
GAGGTG177340.12337456068596646No Hit
GCAGGG177250.12331194813120308No Hit
GGTCGG175720.1222475347002257No Hit
TGGGCG174950.12171184950947238No Hit
GGGGTA174800.12160749525153342No Hit
AGGAGG174530.1214196575872433No Hit
GGGAAG174350.12129443247771653No Hit
GACGGG174330.121280518576658No Hit
AGTGGG174300.12125964772507021No Hit
TCGGGG173780.1208978862975485No Hit
GGGCTG173420.120647436078495No Hit
GGTTGG172690.12013957868985874No Hit
CGGAGG171620.11939518498322749No Hit
GTGGTG170250.11844208276071834No Hit
GTGGGT170140.11836555630489642No Hit
AGGGTG170000.11826815899748672No Hit
GGTGGT169860.11817076169007704No Hit
GGGTAG169160.11768377515302857No Hit
GGGTCG169160.11768377515302857No Hit
GAGTGG168740.11739158323079948No Hit
GGCAGG168360.11712721911068746No Hit
TGGCGG167720.11668197427681455No Hit
GGGCGT167190.11631325589876358No Hit
GGCGGT167180.11630629894823431No Hit
GGGTTG166790.11603497787759302No Hit
CGAGGG166750.11600715007547596No Hit
GTCGGG166090.11554799134054453No Hit
GTGCGG165650.11524188551725692No Hit
TGCGGG165130.1148801240897352No Hit
GGGTGC164960.1147618559307377No Hit
CGGGTG164470.11442096535480377No Hit
AGAGGG164430.11439313755268674No Hit
GGGGTT164230.11425399854210144No Hit
GCTGGG164150.11419834293786733No Hit
GGGGCT163840.11398267747146015No Hit
GCGGTG163580.1138017967576993No Hit
GAGGGC163000.11339829362700198No Hit
GTAGGG162860.1133008963195923No Hit
GAGGCG161390.11227822459179049No Hit
GAGCGG160580.1117147115989201No Hit
TGGTGG160300.11151991698410073No Hit
GTGTGG160090.1113738210229862No Hit
TGGAGG159820.11118598335869605No Hit
GCGGGA159680.11108858605128637No Hit
GCGTGG159410.11090074838699623No Hit
GGCGTG158550.11030245064147953No Hit
TGGGGT158530.11028853674042102No Hit
GGGAGC157220.10937717622108743No Hit
GGGGCA156650.10898063004091939No Hit
AGGGAG155540.10820840853217109No Hit
GGTGCG154800.10769359419300556No Hit
TGTGGG154620.1075683690834788No Hit
TGGGGC153690.10692137268425728No Hit
GGAGGT153650.10689354488214022No Hit
GGGTGT153550.10682397537684757No Hit
GGTAGG153490.10678223367367198No Hit
GTGGGC152200.10588478705539696No Hit
GAGGGT151550.10543258527099478No Hit
CGGGGA151060.10509169469506084No Hit
GTGAGG150750.10487602922865367No Hit
GGTGTG150570.10475080411912693No Hit
GGGATG150450.10466732071277576No Hit
GGAAGG150090.10441687049372225No Hit
GTGGAG147720.10276807321828671No Hit
GGGGAA147660.10272633151511112No Hit
CGTGGG147260.10244805349394057No Hit
GGGAGT147240.10243413959288203No Hit
GGGGAT146440.10187758355054091No Hit
GGCGAG146080.10162713333148742No Hit
GGAGGC145360.10112623289338042No Hit
GGATGG145090.1009383952290903No Hit
GGGGTC144240.10034705443410287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)