FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20420486
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG564930.2766486556686261No Hit
GGGGTG385940.1889964812786532No Hit
TGGGGG368070.1802454652646367No Hit
GGTGGG356590.17462365978948788No Hit
GGGGGT355170.17392827966973948No Hit
GTGGGG348650.17073540757061315No Hit
GGGTGG293220.14359109768494246No Hit
AGGGGG288220.1411425761365327No Hit
GGGGCG281030.13762160214991945No Hit
GCGGGG258330.1265053143201391No Hit
GGGTTG256280.1255014204852911No Hit
TGGGGT253550.12416452771985938No Hit
GGCGGG249990.12242118037739161No Hit
GGGGAG248340.12161316826641638No Hit
GGAGGG248180.12153481557686727No Hit
GGTGGT247480.1211920225600899No Hit
GAGGGG246570.12074639163827933No Hit
CGGGGG244530.11974739484652815No Hit
GGTGTG244270.11962007172601082No Hit
GGGGTT241800.11841050208109641No Hit
TGGGTG240280.11766615153037983No Hit
GGGCGG239050.11706381522947104No Hit
GTTGGG238740.11691200689346963No Hit
GTGGTG237480.11629497946327037No Hit
TGTGGG233130.11416476571615387No Hit
GTGGGT230280.1127691084335603No Hit
TGGTGG228930.11210800761548967No Hit
GGGAGG228550.11192191997781052No Hit
TTGGGG223810.10960072154991805No Hit
GGGGGC213050.10433150317774023No Hit
GGGGGA208520.102113142654881No Hit
AGGGTG207490.10160874721590857No Hit
GGGTGT204420.10010535498518498No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)