FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18886976
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1181780.6257116014760647No Hit
AGGGGG561550.29732128637215405No Hit
GGGTGG558720.29582289933549977No Hit
GGGGGT551700.2921060523399829No Hit
GGGGTG532960.2821838710442582No Hit
GTGGGG524690.2778051923187703No Hit
TGGGGG516800.27362771043919365No Hit
GGTGGG510550.2703185517893389No Hit
GGGGAG460860.24400941685953326No Hit
GGGGGA449560.2380264580205958No Hit
GGAGGG448560.23749699263661903No Hit
GAGGGG413490.21892864162055375No Hit
GGGAGG411690.21797560392939558No Hit
CGGGGG403820.21380871135749843No Hit
GGGGGC391620.20734923367298186No Hit
GGCGGG391590.20733334971146256No Hit
GGGGCG388570.2057343642518527No Hit
GCGGGG381010.20173160594898834No Hit
GGGCGG359520.1903533948473276No Hit
GGGTGT306950.16251939961166892No Hit
AGGGGT295220.15630877065762144No Hit
GGGTTG290520.1538202833529306No Hit
ATGGGG287660.15230601235475705No Hit
GTGGGT282260.14944689928128252No Hit
GGGTAG281150.1488591927050683No Hit
GGGGTT280430.14847797762860504No Hit
GTGTGG275250.14573534693960538No Hit
AGGTGG273860.14499939005587764No Hit
GTTGGG273260.1446817108254916No Hit
GGTTGG270430.14318332378883736No Hit
GGTGGT266400.14104957829141096No Hit
TGTGGG261500.1384551979099248No Hit
AGGGTG261320.138359894140809No Hit
TGGGGT258480.13685621245031496No Hit
GTAGGG257860.13652794391224937No Hit
AAGGGG256350.13572845118244445No Hit
TGGTGG256100.13559608483645025No Hit
GGAGGT254530.13476482418360675No Hit
TAGGGG249540.13212279191756265No Hit
GTGGTG249430.13206455072532522No Hit
AGTGGG248370.13150331741830984No Hit
GGGGTA248290.1314609601875917No Hit
TTGGGG243980.12917896438265183No Hit
GGTGTG241950.128104149653179No Hit
TGGGTG236970.1254674120409747No Hit
AGGGGA232750.12323306812059275No Hit
GGGATG228750.12111520658468566No Hit
TGAGGG223860.11852612085703927No Hit
GATGGG222960.11804960201146017No Hit
AGGAGG222390.11774780674259343No Hit
GGTGGA222060.11757308316588108No Hit
GAGGGT218210.11553464143757051No Hit
GGTAGG217590.11520637289950493No Hit
TGGGGA214700.11367621793981206No Hit
GTGGAG213900.11325264563263066No Hit
GGGTGA213100.11282907332544924No Hit
GAGGTG212590.1125590459796211No Hit
GGAAGG211250.11184956236509223No Hit
GTGGGA211140.11179132117285479No Hit
AGCGGG207530.10987995113669864No Hit
GAGTGG205460.10878395779186673No Hit
GGGGAT205450.10877866313802695No Hit
GGATGG204750.10840803736924323No Hit
GGGAGT204290.10816448329261391No Hit
AGAGGG204180.10810624210037646No Hit
GAAGGG203150.10756089275488041No Hit
GGTGAG201510.1066925695251585No Hit
TTTGGG201050.1064490154485292No Hit
CTGGGG200640.1062319346410987No Hit
GTGGCG200420.10611545225662382No Hit
CGGTGG199600.10568129064176288No Hit
CGGGGT199570.10566540668024357No Hit
GGGAAG199250.10549597775737102No Hit
CAGGGG198260.10497180702723401No Hit
GACGGG198120.10489768187347726No Hit
TCGGGG198040.10485532464275912No Hit
GGCTGG196400.10398700141303722No Hit
TGGAGG196390.10398170675919745No Hit
TGGGAG194760.10311867818331533No Hit
GCGGGT193530.10246743576102389No Hit
GTGAGG193370.10238272129958761No Hit
GGGGCT193210.10229800683815132No Hit
GGGGAA192730.10204386345384249No Hit
CGTGGG190700.10096904872436965No Hit
GGGTCG190640.10093728080133102No Hit
GTGTGT190300.10075726257077894No Hit
GGCAGG190260.10073608395541986No Hit
GGCGGT189430.10029662768671914No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)