FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15228026
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG643260.42241850650898544No Hit
GGGGGT371610.2440303162077606No Hit
GTGGGG365180.2398078385208956No Hit
TGGGGG356690.2342325919327955No Hit
GGGGTG356330.23399618571704567No Hit
GGTGGG342050.22461873915896913No Hit
GGGTGG335220.22013358789904877No Hit
CGGGGG311560.20459644605282393No Hit
GGCGGG308420.20253445850433932No Hit
GGGCGG283480.1861567612243373No Hit
GCGGGG269900.17723899341910765No Hit
AGGGGG264770.17387020484467258No Hit
GGGGGA261980.1720380566726114No Hit
GGGGGC259050.17011397274998086No Hit
GGGGCG253600.1665350453171015No Hit
GGGGTT247140.16229286711225735No Hit
GGAGGG244380.16048041945817534No Hit
TGGGGT242200.1590488484850236No Hit
GAGGGG235090.15437982572396447No Hit
GGGGAG234920.15426818945541595No Hit
GGGAGG226760.1489096485650865No Hit
TTGGGG226710.1488768143684546No Hit
GGTTGG225430.14803625893467742No Hit
GGTGGT224460.14739927552001816No Hit
GTGGGT223080.14649305169297716No Hit
TGGGTG219340.14403705378490947No Hit
TGTGGG218670.14359707555004175No Hit
TGGTGG216220.14198819991507763No Hit
GGGTGT215150.14128554810715455No Hit
GGGTTG213720.1403464900834816No Hit
GTTGGG204600.13435753261781927No Hit
GTGTGG196640.1291303285140175No Hit
TAGGGG190800.12529529434740916No Hit
TCGGGG186890.12272766017079298No Hit
GTGGTG180740.11868905398506675No Hit
GGCGGT179320.1177565628007202No Hit
GGGTAG177470.11654169752533913No Hit
CGGGGT174660.1146964156746252No Hit
TTTGGG173790.11412510065322977No Hit
ATGGGG173670.11404629858131317No Hit
TTGGGT173020.11361945402509821No Hit
GGGGCT171080.11234548719577968No Hit
GGTGTG170130.11172163745977318No Hit
GCGGGT170070.11168223642381488No Hit
GGGGTA167150.10976471934051073No Hit
TGGGGC167050.10969905094724687No Hit
TGGCGG166900.1096005483573511No Hit
TGCGGG163510.10737438982570688No Hit
GCCGGG163080.10709201573467236No Hit
AGGGTG162710.10684904267959618No Hit
TTGGTG162070.10642876496270758No Hit
AGGTGG161420.10600192040649262No Hit
GGGGAT160930.10568014527949979No Hit
GGGCGT160300.1052664344019376No Hit
GGAGGT158250.10392023234002884No Hit
TGGGCG158120.10383486342878585No Hit
GGGCTG156490.10276446861858524No Hit
CGGTGG155460.10208808416796768No Hit
GGGTGA155270.10196331422076636No Hit
GTCGGG153170.1005842779622257No Hit
TGGGAG153160.10057771112289933No Hit
GGCCGG152550.10017713392398989No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)