FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10574168
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG335430.31721644672186033No Hit
GGGGGT218210.20636138937834164No Hit
GGTGGG197690.18695560728749533No Hit
TGGGGG197620.18688940822578193No Hit
GTGGGG192130.18169751038568707No Hit
GCGGGG187050.17689334990705652No Hit
GGGGTG186780.17663801066901907No Hit
GGGTGG176240.16667032337674226No Hit
GGCGGG171430.16212150213614915No Hit
AGGGGG166860.1577996491071449No Hit
GGGGGC163090.15423435678343678No Hit
GGGCGG162880.15403575959829652No Hit
GGGGGA162450.15362910821919984No Hit
CGGGGG154950.14653635160704842No Hit
GAGGGG152300.14403024427075492No Hit
GGGGAG145970.1380439576900991No Hit
GGGGCG142490.13475291862206085No Hit
GGTGGT132010.12484197338268127No Hit
GGAGGG127780.12084165865342786No Hit
GGGAGG126770.11988650076299147No Hit
GGGGTT124960.11817478216725892No Hit
GTGGTG123060.11637795049218057No Hit
GTGGGT118860.11240600678937578No Hit
AGGGGT116540.11021198074401693No Hit
TGGTGG115760.10947433405635318No Hit
GGTGTG115500.10922845182713194No Hit
TGGGTG114700.10847189112183578No Hit
TGTGGG114530.10831112197196036No Hit
GGGTGT114510.10829220795432794No Hit
GTGTGG112370.10626840806766075No Hit
TTGGGG108410.10252343257644478No Hit
TCGGGG106800.10100085415703627No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)