FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4022440
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG343300.853462077743857No Hit
AGGGGG155260.38598462624675567No Hit
GTGGGG151600.37688567138353835No Hit
TGGGGG151060.37554320263322755No Hit
GGGTGG147290.36617078191346547No Hit
GGGGGT132090.32838277264545895No Hit
CGGGGG128880.32040254174083393No Hit
GAGGGG127270.31639999602231483No Hit
GGTGGG121110.30108590805580693No Hit
GGGGTG119870.2980032020365748No Hit
GGGGGA116120.288680502381639No Hit
GGGAGG114970.2858215411541254No Hit
GGGGGC114840.28549835423275427No Hit
GCGGGG113630.2824902298107616No Hit
GGAGGG110830.2755292807350762No Hit
GGGGCG108250.2691152633724804No Hit
GGGCGG105140.2613836377919869No Hit
GGGGAG103350.25693360249003094No Hit
GTGTGG75040.18655343522836884No Hit
GGGTGT73680.1831724028201788No Hit
GGCGGG72540.18033830212507831No Hit
TTGGGG69960.17392428476248248No Hit
TGGTGG67510.16783345432125774No Hit
GGGTTG66720.16586947226061793No Hit
ATGGGG64720.1608973657779855No Hit
AGGTGG64690.16082278418074603No Hit
GTGGGT63900.15885880212010622No Hit
TGGGGT63800.1586101967959746No Hit
TGGGTG61550.1530165770030131No Hit
GTGGTG60540.15050566322928371No Hit
GTAGGG60440.1502570579051521No Hit
GGGTAG58560.14558327781147762No Hit
GGGGTT58440.14528495142251968No Hit
CTGGGG58310.14496176450114856No Hit
TAGGGG58220.1447380197094301No Hit
AAGGGG58140.1445391354501248No Hit
GTGAGG57680.14339555095911935No Hit
CGGTGG57490.14292320084326926No Hit
TGTGGG57210.14222710593570073No Hit
GGTGGT57190.1421773848708744No Hit
GGGGTA57120.14200336114398227No Hit
GGTTGG56720.14100893984745577No Hit
GTTGGG56590.14068575292608465No Hit
AGGGTG56420.1402631238750609No Hit
TGAGGG56330.14003937908334246No Hit
GGATGG54790.1362108570917155No Hit
AGGGGT54570.13566392537862593No Hit
TGCGGG53400.13275524308628595No Hit
GGGGAT53360.1326558009566333No Hit
TGGGAG53160.13215859030837004No Hit
TGGGGA53070.1319348455166516No Hit
GTGGAG53050.13188512445182526No Hit
GTGGGC53010.1317856823221726No Hit
GTGGGA52690.13099014528495143No Hit
TCGGGG52620.13081612155805927No Hit
AGTGGG52240.12987142132635912No Hit
GGGGAA52210.12979683972911962No Hit
GTGCGG52180.12972225813188015No Hit
GAGTGG51840.12887700002983263No Hit
GAAGGG51650.12840464991398257No Hit
GTGGCG51530.12810632352502463No Hit
GGGAGT51370.127708555006414No Hit
CGGGTG51210.12731078648780342No Hit
GGTGTG51130.1271119022284981No Hit
CAGGGG51100.12703732063125864No Hit
GCAGGG51020.12683843637195336No Hit
CCGGGG50670.12596831773749267No Hit
GGGTCG50540.12564513081612155No Hit
GGGTGA50410.12532194389475046No Hit
AGGAGG49940.12415349887133183No Hit
TGGCGG49840.12390489354720022No Hit
GGGGCT49460.12296019331550004No Hit
AGAGGG49390.1227861695886079No Hit
GGAGGT49100.1220652141486262No Hit
AGGGAG48790.12129453764381819No Hit
TGGAGG48670.12099621125486024No Hit
GGGATG48640.12092162965762075No Hit
CGGGGT48560.12072274539831544No Hit
AGGGGA48500.12057358220383647No Hit
GGTAGG48470.12049900060659699No Hit
GGGCTG48380.12027525581487852No Hit
GGCTGG48110.11960402143972315No Hit
GCGTGG47720.11863446067560983No Hit
GGTGAG47600.11833613428665188No Hit
GGGTGC47510.11811238949493344No Hit
TGGGGC47400.11783892363838863No Hit
TGGGCG47330.1176648999114965No Hit
GGGGTC47100.11709310766599378No Hit
CGGGGA46710.11612354690188045No Hit
GAGAGG46700.1160986863694673No Hit
GGAAGG46630.11592466264257516No Hit
ACGGGG46600.11585008104533566No Hit
GGGAAG45980.1143087280357196No Hit
GGTCGG45960.11425900697089328No Hit
GCTGGG45810.11388609898469586No Hit
GGGGCA45770.11378665685504322No Hit
GATGGG45690.11358777259573791No Hit
GGGCGT45380.1128170960909299No Hit
GGTGGA45340.11271765396127724No Hit
CGGGGC45340.11271765396127724No Hit
GGGACG45280.11256849076679827No Hit
AGGGGC44670.11105199828959537No Hit
CGTGGG44450.11050506657650581No Hit
CGGAGG44450.11050506657650581No Hit
AGGGCG44280.11008243752548205No Hit
CGGGAG44230.10995813486341624No Hit
GGGAGA43800.10888913196965026No Hit
GAGGTG43590.10836706078897387No Hit
AGCGGG43350.10777040801105797No Hit
GAGGGT43000.10690028937659728No Hit
GGTGGC42840.1065025208579867No Hit
GAGGGA42680.1061047523393761No Hit
CGAGGG42600.1059058680800708No Hit
GCGGTG42320.10520977317250227No Hit
AGGCGG41960.10431479400562843No Hit
GTCGGG41880.10411590974632313No Hit
GACGGG41770.10384244388977834No Hit
GTGTGT41720.10371814122771253No Hit
GGGCAG41690.10364355963047304No Hit
GAGGGC41630.10349439643599409No Hit
GGTGCG41100.10217678821809648No Hit
TTGTGG40900.10167957756983324No Hit
GAGGAG40840.10153041437535426No Hit
GGGCGC40660.10108292479191734No Hit
GGGCGA40610.10095862212985153No Hit
GGGGCC40290.10016308509263035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)