FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3354608
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG99630.29699446254227024No Hit
GCAATT73570.2193102741065424No Hit
GTGGGG65640.1956711484620558No Hit
TGGGGG62240.18553583607980426No Hit
GGGGTG61530.18341934437645174No Hit
GGGGGT59990.17882864406213783No Hit
GGTGGG58660.17486394833613944No Hit
GGGGCG53040.1581108731631237No Hit
GGGTGG53010.15802144393622145No Hit
CGGGGG51890.1546827527985386No Hit
GCGGGG50110.14937661866900692No Hit
AGGGGG49000.14606773727362482No Hit
GGCGGG48680.14511382552000116No Hit
GGGGGC43820.13062629076184162No Hit
GGGCGG43060.1283607503469854No Hit
GGAGGG41780.12454510333249072No Hit
GGGGAG41690.12427681565178406No Hit
TGGTGG41420.12347195260966409No Hit
GTTGGG41190.12278632853674706No Hit
GGGAGG40270.12004383224507902No Hit
GGGGGA39910.11897068152225239No Hit
GTGGTG39610.11807638925323018No Hit
TTGGGG39030.11634742419978727No Hit
GAGGGG38820.11572141961147175No Hit
GTGTGG38130.11366454739272071No Hit
GGGGTT37760.11256158692759333No Hit
GGGTGT37730.11247215770069112No Hit
GGTTGG37400.1114884362047667No Hit
TGGGTG36570.10901422759380529No Hit
TGTGGG36400.10850746197469273No Hit
GTGGGT36380.10844784249009125No Hit
GGTGTG35910.10704678460195648No Hit
GGGTTG35680.10636116052903945No Hit
ATGGGG35590.1060928728483328No Hit
TGGGGT35290.10519858057931061No Hit
GGTGGT35100.10463219547559655No Hit
CTGGGG34360.10242627454534181No Hit
TTGTGG34300.10224741609153737No Hit
GGGTCG33710.10048864129579374No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)