FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9278410
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG242270.2611115482070743No Hit
GTGGGG167080.1800739566369669No Hit
GGGTGG162990.17566587378656473No Hit
GGGGGT158610.17094523738442255No Hit
GGTGGG149640.1612776326978437No Hit
TGGGGG145290.1565893294217436No Hit
GGGGTG139400.15024125900881724No Hit
GTGTGG129190.13923721844583287No Hit
GGCGGG125640.13541113186418793No Hit
GTGGGT117670.12682129804567807No Hit
GGGCGG116510.12557108383871807No Hit
GGGTTG116370.1254201959171884No Hit
CGGGGG116210.12524775257829737No Hit
GTTGGG114720.12364187398487456No Hit
AGGGGG111880.12058100471955863No Hit
GGGGTT111730.12041933908934828No Hit
TTGGGG110950.11957867781225448No Hit
GGGTGT110930.11955712239489309No Hit
GGGGCG109360.11786502213202478No Hit
GGTGGT107770.11615136645179508No Hit
GGAGGG107730.11610825561707233No Hit
GGGGAG105330.11352160553370674No Hit
TGGGGT104380.11249772320904121No Hit
GGTTGG103900.11198039319236809No Hit
GCGGGG103820.11189417152292257No Hit
GGGGGA102390.11035295918158392No Hit
TGTGGG101360.10924285518747286No Hit
GGGGGC100590.10841297161905973No Hit
GTGGTG99840.107604643468008No Hit
GAGGGG98360.10600954258326589No Hit
GTTGGT97410.10498566025860034No Hit
TGGTGG97270.1048347723370707No Hit
GTTTGG97090.10464077358081827No Hit
GGGAGG97040.10458688503741483No Hit
GGTGTG97000.10454377420269206No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)