FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4370168
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG176090.40293645461684763No Hit
TGGGGG135070.3090727862178296No Hit
GGGGGT104970.24019671554960817No Hit
GGGAGG98370.22509432131670912No Hit
AGGGGG95130.21768041869328594No Hit
GGGGAG87890.20111354986810576No Hit
TGGGGT86110.1970404799083239No Hit
GTGGGG78560.17976425620250755No Hit
GGAGGG78490.1796040792939768No Hit
GGTGGG76030.17397500507989624No Hit
GGGTGG74180.16974175821158363No Hit
GGGGGA73390.16793404738673662No Hit
GGGGTG69870.15987943712919045No Hit
TTGGGG68050.155714837507391No Hit
TGGAGG66640.15248841692127169No Hit
GGGGAA66610.15241976967475848No Hit
CGGGGG65490.14985693913826653No Hit
GAGGGG65400.149650997398727No Hit
ATGGGG64380.14731699101727896No Hit
TAGGGG63260.14475416048078701No Hit
GGGCGG62360.14269474308539168No Hit
GGGGAT62080.14205403545126868No Hit
AGGGGT61760.14132179815512813No Hit
GGGGCG61620.14100144433806663No Hit
GTAGGG59500.1361503722511354No Hit
TGGGGA59490.13612748983563103No Hit
TGGTGG58590.1340680724402357No Hit
TGGGAG56730.1298119431564187No Hit
GGGTAG56470.1292170003533045No Hit
GGGATG55140.12617363909122029No Hit
GTTGGG54690.12514393039352262No Hit
TGAGGG54370.12441169309738208No Hit
GGGGTA53300.12196327463841207No Hit
GGGGTT52800.12081915386319243No Hit
GGGTTG52740.1206818593701661No Hit
TGTGGG52710.12061321212365292No Hit
GGTAGG51610.11809614641816973No Hit
GGGGGC51430.11768426293909068No Hit
GGAAGG50090.11461801926150209No Hit
GGGAGT50000.11441207752196254No Hit
GGTTGG49860.11409172370490103No Hit
GGTGGT49810.11397731162737909No Hit
AAGGGG49660.1136340753948132No Hit
GGAGGT49440.11313066225371655No Hit
GGATGG49330.11287895568316823No Hit
GGGGCT48970.11205518872501011No Hit
TGGGTG48720.1114831283374003No Hit
GGGAAG48660.11134583384437395No Hit
GGCGGG48400.11075089104125974No Hit
GTGGGT48290.11049918447071141No Hit
GTGGAG47240.10809653084275023No Hit
TTTGGG46830.10715835180707012No Hit
TGGGCG46700.10686088040551302No Hit
GGGTGT46520.10644899692643395No Hit
CGGGGT46300.10594558378533732No Hit
AGGAGG45750.10468705093259574No Hit
AGGTGG45730.10464128610158693No Hit
GGCTGG45380.1038404015589332No Hit
GCGGGG44820.10255898629068722No Hit
AGGGAG44700.10228439730463451No Hit
TGGTGT44530.10189539624105984No Hit
TTGGGT44370.10152927759298955No Hit
AGTGGG44300.10136910068445883No Hit
TGGTTG44200.10114027652941487No Hit
CTGGGG44050.100797040296849No Hit
CAGGGG43980.10063686338831826No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)