FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2296298
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG58430.25445303701871447No Hit
GGGGTG38020.16557084489905058No Hit
GTGGGG37180.16191278309696738No Hit
GGGTGG35180.15320311213962648No Hit
GGGGGT33920.1477160194365017No Hit
GGTGGG32580.1418805398950833No Hit
TGGGGG31390.13669828567546546No Hit
GTGGGT27480.11967087895386401No Hit
GTTGGG27340.11906120198685013No Hit
GGGCGG26780.11662249411879468No Hit
GGGAGG26710.11631765563528776No Hit
GGCGGG26440.11514185005604674No Hit
GGTGGT26410.11501120499168663No Hit
GGGGTT26230.11422733460552593No Hit
CGGGGG25990.11318217409064502No Hit
GTGTGG25760.11218056193055082No Hit
AGGGGG25570.11135314318960345No Hit
GGGGGC25570.11135314318960345No Hit
GGGTGT25560.11130959483481673No Hit
GGGTTG25360.11043862773908264No Hit
GGTTGG25160.10956766064334855No Hit
GGGGAG24630.10725959783965322No Hit
GGGTTT24450.10647572745349253No Hit
GTGGTG24360.1060837922604122No Hit
TGGTGG24120.10503863174553128No Hit
GGAGGG23930.10421121300458391No Hit
AGGGGT23720.10329669755406311No Hit
TTGGGG23550.10255637552268912No Hit
GGGGCG23070.10046605449292731No Hit
GCGGGG23020.10024831271899379No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)