FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8246936
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCG188980.22915177224608024No Hit
GGGGGG142440.17271869213002258No Hit
GCAATT136610.1656493999710923No Hit
GGGTGG105540.12797480179305382No Hit
GGGGGT104590.12682285881689878No Hit
GTGGGG103370.12534352152120495No Hit
TGGGGG100550.12192406973935532No Hit
GGGGTG99240.12033560100381524No Hit
GGTGGG95620.11594609197888768No Hit
GTGTGG91010.11035613711565119No Hit
TTGGGG85220.1033353478188748No Hit
GTGGTG84330.1022561591359506No Hit
GGGGTT83370.10109209044425711No Hit
GTTGGG83220.10091020471118001No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)