FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2992416
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG74490.24892929325334448No Hit
TGGGGG56630.189245078224418No Hit
GGGGTG50520.16882679413557472No Hit
GGTGGG50470.16865970506774458No Hit
GGGGGT49300.1647498208805193No Hit
GTGGGG48060.1606060119983318No Hit
GGGTGG47640.1592024638285586No Hit
TGGTGG41440.13848341941762107No Hit
TGCAAT40280.1346069530439618No Hit
AGGGGG40120.13407226802690533No Hit
GGGGTT37990.12695427373734133No Hit
GGAGGG37630.12575123244896433No Hit
TGTGGG37260.12451477334702128No Hit
GGTGGT36820.12304438955011603No Hit
TTGGGG36530.12207527295670122No Hit
TGGGGT35610.1190008341086266No Hit
GGTTGG35380.11823222439660795No Hit
GTTGGG34840.11642766246404243No Hit
GGGTGT34560.11549196368419365No Hit
GGGGCG34390.11492386085357115No Hit
GGGCGG34230.11438917583651471No Hit
GTGGTG34190.11425550458225059No Hit
CGGGGG33990.11358714831093003No Hit
GTGTGG33920.11335322361596785No Hit
GGGTTG33610.11231727139542096No Hit
GGCGGG33450.11178258637836451No Hit
TGGGTG32910.10997802444579897No Hit
GGGGAG32520.10867472971672389No Hit
GGTGTG32430.10837396939462962No Hit
GTGGGT32280.1078727021911392No Hit
GGGAGG31230.10436383176670623No Hit
TTGTGG30890.10322762610546128No Hit
TGTTGG30670.10249243420700864No Hit
GGGGGC30640.10239218076631056No Hit
GTGGTT30510.10195774918995221No Hit
GAGGGG30460.10179066012212207No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)