FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4088309
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG142980.3497289466133798No Hit
GGGGGT86070.21052713970494893No Hit
GTGGGG83370.20392294222378984No Hit
GGGTGG75820.1854556492672154No Hit
TGGGGG73230.17912051168343684No Hit
GGGGTG72970.17848455192599189No Hit
GGTGGG70700.17293213404368407No Hit
GCGGGG64340.15737557997695378No Hit
GGCGGG61680.15086922245847856No Hit
GGGGGA61420.1502332627010336No Hit
GGGCGG61240.14979298286895634No Hit
AGGGGG61200.14969514290627248No Hit
GGAGGG60430.1478117236246086No Hit
GGGGAG58770.1437513651732293No Hit
CGGGGG58740.14367798520121644No Hit
GAGGGG58560.14323770536913916No Hit
GGGAGG56400.1379543473842119No Hit
GGGGCG54880.13423642880222605No Hit
GGGGTT54490.13328248916605864No Hit
GGGGGC53970.13201056965116872No Hit
GTTGGG52030.12726533146100258No Hit
GTGGGT50500.12352295288834576No Hit
GGGTGT49370.12075897394252734No Hit
GGGTTG49150.12022085414776623No Hit
GTGTGG49060.12000071423172759No Hit
GGTTGG47430.1160137357523612No Hit
TTGGGG47120.11525547604156144No Hit
TGGTGG46000.11251595708641397No Hit
GGATGG44390.10857789858838948No Hit
GGCTGG44070.10779517888691878No Hit
TGTGGG43870.10730597907349958No Hit
GGGGAT43060.10532471982915186No Hit
GTGGTG42940.10503119994110033No Hit
ATGGGG42320.10351468051950086No Hit
GTTTGG41880.10243844092997863No Hit
TGGGGT41530.10158234125649504No Hit
GTCGGG41180.10072624158301145No Hit
TGGGTG41100.10053056165764379No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)