FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3567902
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT190550.5340673594734385No Hit
GGGGGG188640.5287140734246625No Hit
GTGGGG111000.3111071996932651No Hit
TGGGGG100300.28111758674986026No Hit
GGGTGG94520.26491759022529204No Hit
GGGGGT91330.2559767616935667No Hit
CGGGGG86540.24255150505815465No Hit
GGGGTG82920.23240548647356346No Hit
GGTGGG80540.2257348996693295No Hit
AGGGGG80210.2248099863729441No Hit
GAGGGG76070.21320652865465475No Hit
GGCGGG75190.21074009319762707No Hit
GGGGAG74820.2097030691986495No Hit
GGGGCG74650.2092265987126328No Hit
GGGAGG70470.19751103029175127No Hit
GGGCGG69810.19566120369898052No Hit
GCGGGG68070.19078438813622123No Hit
GGGGGA67300.188626257111322No Hit
GGAGGG66300.1858234895465178No Hit
GTGTGG64050.17951726252570838No Hit
GGGGGC63460.17786362966247393No Hit
TTGGGG59120.16569961843122374No Hit
GTGGGT56690.15888889324874955No Hit
GTGGTG53460.149835954014432No Hit
GGGTGT52380.14680896504444346No Hit
TGTGGG51760.1450712491542649No Hit
TGGGGT51260.1436698653718628No Hit
GGGTTG51000.14294114580501371No Hit
GTTGGG50140.1405307656992821No Hit
TGGTGG49580.13896121586299176No Hit
TGGGTG49420.13851277305262308No Hit
ATGGGG48580.13615844829818755No Hit
TCGGGG48180.13503734127226588No Hit
GGTTGG48060.13470100916448938No Hit
GGTGGT46740.13100135597894785No Hit
CTGGGG46620.13066502387117135No Hit
CGGTGG45920.12870308657580842No Hit
GTCGGG45760.12825464376543974No Hit
GTGGCG45150.1265449555509092No Hit
GGTGTG43990.12329374517573632No Hit
GGGTAG43430.12172419533944599No Hit
GGGGTT43010.12054703296222823No Hit
TGCGGG42690.11965014734149088No Hit
AGGTGG42430.11892142777464179No Hit
GTAGGG42330.11864115101816138No Hit
GGGTCG42170.11819270820779271No Hit
CGTGGG41940.11754807166788772No Hit
GTGGGA41320.11581035577770914No Hit
GTGAGG41260.1156421897238209No Hit
TAGGGG40790.11432488896836292No Hit
GGCTGG40510.11354011405021774No Hit
TGGCGG40440.11334392032068147No Hit
GGGATG39910.11185845351133522No Hit
AGGGTG39510.11073734648541354No Hit
GGATGG39200.10986848854032426No Hit
TGGGCG39170.10978440551338013No Hit
CGGGGT39140.109700322486436No Hit
AGGGGT38980.10925187967606732No Hit
GGGGTA38660.10835499405533No Hit
GTGGAG38500.10790655124496133No Hit
GGGGAT38350.1074861361102407No Hit
GTGCGG38180.10700966562422398No Hit
AGTGGG38140.10689755492163183No Hit
TGGAGG38110.10681347189468769No Hit
GGGGCT37980.10644911211126315No Hit
AAGGGG37920.1062809460573749No Hit
GAGGGT37740.10577644789571013No Hit
GTGTGT37420.1048795622749728No Hit
GGGCGT37230.10434703643766No Hit
CCGGGG37010.10373042757340309No Hit
GGTGAG37000.10370239989775504No Hit
GGGGCA36640.10269340357442554No Hit
GGCGGT36400.10202073935887251No Hit
TGAGGG35710.10008682973915763No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)