FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2990889
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG197760.6612080889661903No Hit
CGGGGG90890.30388957931905863No Hit
GGGTGG86310.28857640654668226No Hit
GGGGGT83920.2805854714100055No Hit
TGGGGG83120.277910681406097No Hit
GTGGGG83090.2778103767809504No Hit
GGGCGG77970.2606917207559358No Hit
AGGGGG75610.2528010902444056No Hit
GGGGTG72450.24223566972896687No Hit
GGCGGG70800.2367189153459055No Hit
GGGGGC69490.2323389467145053No Hit
GCGGGG69470.23227207696440758No Hit
GGGGAG68560.22922950333496162No Hit
GGTGGG67830.22678875745639507No Hit
GGGAGG67130.2244483162029751No Hit
GGGGGA64500.21565494406512578No Hit
GGGGCG64180.21458502806356236No Hit
GAGGGG63960.21384946081248754No Hit
GGAGGG63890.21361541668714554No Hit
ATCTCG63610.21267924018577755No Hit
CTGGGG43610.14580949008806413No Hit
CGGGGT41900.14009212645470961No Hit
GTGTGG41050.1372501620755568No Hit
TGGTGG40230.13450850232155054No Hit
GGGTTG40130.13417415357106197No Hit
CAGGGG39910.13343858631998715No Hit
GCCGGG39820.13313767244454744No Hit
TGGGGT39520.13213462619308172No Hit
GGCCGG39380.13166653794239774No Hit
ATGGGG39320.13146592869210458No Hit
TTGGGG38990.13036257781549232No Hit
TGCGGG38410.12842335506265862No Hit
CCGGGG38020.12711939493575322No Hit
CGGTGG37940.12685191593536238No Hit
GTGGTG37730.12614978355933637No Hit
GCAGGG37630.1258154348088478No Hit
GGGCGT37500.12538078143321266No Hit
GTGGGT37170.1242774305566004No Hit
GTAGGG37150.12421056080650268No Hit
CGCGGG36810.12307377505484154No Hit
GGCAGG36710.12273942630435299No Hit
GTCGGG36670.12260568680415755No Hit
GGGTGT36630.12247194730396213No Hit
GGGCCG36390.12166951030278958No Hit
GGGGTT36270.12126829180220328No Hit
GGGTCG36210.12106768255191015No Hit
CGGGGC35850.11986402705015131No Hit
GGCTGG35730.11946280854956504No Hit
TAGGGG35670.1192621992992719No Hit
GTTGGG35650.11919532954917417No Hit
TGAGGG35620.11909502492402761No Hit
TCGGGG35610.11906159004897875No Hit
GTGCGG35450.11852663204819704No Hit
AGGGGT35250.11785793454721992No Hit
GGGGCT34970.1169217580458519No Hit
TGGGAG34770.11625306054487479No Hit
GGTGGT34650.1158518420442885No Hit
AGGTGG34550.11551749329379993No Hit
GGCGGT34470.11525001429340909No Hit
GGGTAG34280.11461475166748081No Hit
GGAGGT34190.1143138377920411No Hit
CGGGCG34140.11414666341679681No Hit
TCTCGT33950.11351140079086855No Hit
TGGGTG33910.1133776612906731No Hit
GTGGAG33900.11334422641562426No Hit
GCGTGG33800.11300987766513569No Hit
GGGCGC33730.11277583353979369No Hit
TGGGGA33650.11250835453940283No Hit
GTGGCG33390.11163904778813255No Hit
CGGGAG33130.1107697410368623No Hit
GGGGCC33010.110368522536276No Hit
TGGGGC32860.10986699941054315No Hit
GCGGGT32690.1092986065347126No Hit
CGAGGG32310.10802808128285604No Hit
GGGGAT32170.10755999303217205No Hit
GGGGTA32080.10725907915673231No Hit
GGTTGG31960.10685786065614605No Hit
GGGGAA31820.10638977240546206No Hit
TGTGGG31810.1063563375304132No Hit
GTGGGC31810.1063563375304132No Hit
CGGGTG31740.1061222934050712No Hit
GGGGTC31660.10585481440468034No Hit
CGGAGG31650.10582137952963148No Hit
AAGGGG31540.10545359590409407No Hit
GGTCGG31420.10505237740350779No Hit
GGGCAG31390.10495207277836122No Hit
GGCGCG31370.1048852030282635No Hit
GGGGAC31270.10455085427777493No Hit
ACGGGG31150.10414963577718866No Hit
AGTGGG30990.10361467777640694No Hit
GGAGTG30950.10348093827621152No Hit
GGGTGC30940.10344750340116265No Hit
CGTGGG30840.1031131546506741No Hit
TGGGCG30670.10254476177484353No Hit
GGGAAG30500.10197636889901296No Hit
GGATGG30390.10160858527347555No Hit
TGGCGG30350.10147484577328011No Hit
GGGCTG30260.10117393189784041No Hit
GTGAGG30180.10090645289744955No Hit
GCGGGC29950.10013745077132585No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)