FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2399236
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG78000.3251034912780568No Hit
GGGTGG50080.20873311337442418No Hit
GGGGTG42160.17572260502926765No Hit
GGGGGT41200.1717213312904608No Hit
GTGGGG40380.16830357663856327No Hit
GGTGGG38950.16234334596513222No Hit
AGGGGG37180.1549659975092071No Hit
TGGGGG36910.15384063927016767No Hit
CGGGGG36560.15238184155289433No Hit
GGAGGG33870.1411699390972793No Hit
GGGGAG33290.13875250288008348No Hit
GAGGGG32570.13575154757597835No Hit
GGGGCG32380.13495962881517284No Hit
GGCGGG31700.13212539325018466No Hit
GGGAGG31080.12954123729387187No Hit
GGGGGC31070.12949955735909263No Hit
GGGCGG30400.1267070017288837No Hit
GGGGGA29330.12224724870750522No Hit
GTGTGG28600.11920461346862084No Hit
GGGTGT28540.11895453385994542No Hit
GCGGGG28350.11816261509913989No Hit
GTTGGG27960.11653709764274961No Hit
TGGTGG27240.11353614233864447No Hit
GTGGTG26970.11241078409960505No Hit
GGGTTG26080.10870126990425286No Hit
GGGTAG25020.10428319681765362No Hit
GTGGGT25010.10424151688287438No Hit
GGTGGT24930.10390807740464049No Hit
GGTGTG24730.10307447870905571No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)