FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3670252
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG232380.633144536124495No Hit
GTGGGG114270.3113410196357089No Hit
TGGGGG106190.2893261825073592No Hit
GGGGGT106050.28894473730959075No Hit
GGGTGG105830.28834532342738317No Hit
GGCGGG102030.27799181091652564No Hit
GGGCGG100400.2735506989710788No Hit
CGGGGG95590.26044533181917756No Hit
GGGGCG91840.2502280497360944No Hit
AGGGGG91650.24971037411055155No Hit
GCGGGG91520.24935617499833798No Hit
GGGGTG91370.24894748371501468No Hit
GGGGGC88660.24156379452963994No Hit
GGTGGG86430.2354879174508998No Hit
GGGGGA83910.22862190389106798No Hit
GGAGGG81740.2227095033256572No Hit
GGGAGG81000.22069329299459547No Hit
GGGGAG77600.21142962390593342No Hit
GAGGGG68780.18739857644652194No Hit
GTGTGG63240.1723042450491138No Hit
TTGGGG57070.1554934102617477No Hit
GTGGGT55980.15252358693626486No Hit
GGGTGT55540.1513247591718498No Hit
TGGTGG54970.14977173229522114No Hit
GTCGGG54640.14887261147190983No Hit
GGGTTG53960.14701987765417743No Hit
GTGAGG51600.14058980146322378No Hit
TGGGGT51120.13928198935658914No Hit
CTGGGG50780.13835562244772293No Hit
GGGGTT50590.13783794682218006No Hit
GTGGCG50130.13658462688665518No Hit
GTTGGG49600.1351405843522461No Hit
AGGGGT49110.1338055261600566No Hit
GGGTAG48920.1332878505345137No Hit
GTGGTG48840.1330698818500746No Hit
GGCTGG48820.13301538967896484No Hit
GTAGGG48440.1319800384278791No Hit
AGGTGG47590.12966412115571355No Hit
GTGCGG47160.12849253947685335No Hit
GGGTCG47140.12843804730574357No Hit
TGGGCG46680.12718472737021871No Hit
TGCGGG46530.1267760360868954No Hit
TGTGGG46260.12604039177691342No Hit
GGGGCT46250.12601314569135852No Hit
GCAGGG46210.12590416134913895No Hit
ATGGGG46030.12541373180915097No Hit
CGGTGG45740.12462359532805921No Hit
GGCCGG45350.12356099799141858No Hit
GGGCTG45340.12353375190586367No Hit
GGGGTA45290.12339752147808924No Hit
TGGCGG45220.12320679887920503No Hit
TAGGGG45200.12315230670809525No Hit
GGTTGG44740.12189898677257037No Hit
GGTGGT44660.12168101808813128No Hit
GGCGGT44510.12127232680480796No Hit
GGAGGT44370.12089088160703951No Hit
TCGGGG43940.11971929992817931No Hit
CGGGGT43880.11955582341484998No Hit
TGGGTG43730.11914713213152667No Hit
GGTGTG43660.11895640953264244No Hit
GGGTGA43500.11852047216376423No Hit
TGAGGG43420.11830250347932512No Hit
GGGCCG43240.11781207393933714No Hit
GGGGCA42840.1167222305171416No Hit
GGGCGT42770.11653150791825738No Hit
GCTGGG42690.11631353923381828No Hit
GGGGAT42190.11495123495607386No Hit
CGCGGG41820.113943129790543No Hit
GCGTGG41770.11380689936276854No Hit
GCGGGT41760.11377965327721366No Hit
GGGTGC41620.11339820807944523No Hit
GGCAGG41350.11266256376946324No Hit
CGGCGG41200.11225387248613991No Hit
CCGGGG40910.11146373600504815No Hit
CAGGGG40680.11083707603728571No Hit
ACGGGG40510.11037389258285261No Hit
GTGGGA40430.11015592389841353No Hit
TGGGGC40390.11004693955619395No Hit
TGGGAG40270.10971998652953531No Hit
GAGTGG40170.10944752567398641No Hit
TGGAGG39830.10852115876512022No Hit
GCCGGG39820.10849391267956532No Hit
GTGGAG39680.10811246748179688No Hit
GGCGTG39610.10792174488291267No Hit
GGCGCG39350.10721334665848557No Hit
GAGGGT39120.10658668669072315No Hit
CGGGGC38870.10590553455185094No Hit
CGTGGG38590.10514264415631407No Hit
GGATGG38290.10432526158966741No Hit
GGGACG38080.10375309379301477No Hit
TGGGGA38030.10361686336524031No Hit
GGGGAA37920.10331715642413655No Hit
CGGGTG37770.10290846514081323No Hit
GGTCGG37680.10266325037081923No Hit
GGGCGC37400.10190035997528235No Hit
GTGGGC37300.10162789911973347No Hit
GGGGTC37010.1008377626386417No Hit
GGGATG36970.10072877829642216No Hit
AGCGGG36930.10061979395420259No Hit
GGTAGG36770.10018385658532439No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)