FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5168989
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG95550.1848523957005906No Hit
GTGGGG72970.1411688049636012No Hit
TGGGGG71350.1380347298088659No Hit
GGGGGT70350.13610011551581944No Hit
GGGGTG69990.1354036543703227No Hit
GGTGGG67620.13081861849580256No Hit
TTGGGG62770.12143573917452717No Hit
TGTGGG60160.11638639586967588No Hit
GTGTGG59640.1153803964372917No Hit
GTTGGG59580.11526431957970891No Hit
GCAATT59460.11503216586454333No Hit
GTGGTG58940.11402616643215917No Hit
GGGTTG58880.11391008957457639No Hit
TGGGGT57050.11036974541830133No Hit
GTGGGT56950.11017628398899669No Hit
GGGTGT55990.10831905426767208No Hit
AGGGGG55140.10667463211858257No Hit
GTGTGT53790.10406290282296983No Hit
GGGTGG53740.1039661721083175No Hit
GTGTTG53540.10357924924970822No Hit
TTGTGG53280.10307624953351613No Hit
TGGGTG52850.10224436538750614No Hit
TGGGTT52060.10071602009599943No Hit
GGTGTG52000.10059994323841664No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)