FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1238107
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG38080.3075663088892963No Hit
GGGTGG23210.18746360371114937No Hit
AGGGGG22710.18342518053770798No Hit
TGGGGG21960.17736754577754588No Hit
CGGGGG21250.1716329848712591No Hit
GGGGGT20990.1695330048210696No Hit
GTGGGG20350.1643638231590646No Hit
GGGGTG19710.1591946414970596No Hit
GGGCGG18260.1474832142940796No Hit
GGTGGG17700.14296018033982524No Hit
GAGGGG17080.13795253560475793No Hit
GGAGGG16890.13641793479885017No Hit
GGGGAG16680.1347217970660048No Hit
GGGGGC15640.1263218768652467No Hit
GGCGGG15590.12591803454790257No Hit
GGGTGT15540.12551419223055843No Hit
GCGGGG15190.12268729600914946No Hit
GGGGGA15120.12212191676486765No Hit
GGTGGT14760.11921425207998987No Hit
GGGGCG14650.11832579898183274No Hit
GGGGTT14380.11614505046817439No Hit
GGGAGG14200.1146912181257355No Hit
GGGTAG13390.10814897258476044No Hit
TGGTGG13370.10798743565782279No Hit
GGTTGG13280.10726051948660334No Hit
TGAGGG12940.1045143917286632No Hit
AGGTGG12880.10402978094785022No Hit
GTGTGG12810.10346440170356842No Hit
CGGGGT12800.10338363324009961No Hit
GCAGGG12770.10314132784969311No Hit
GGTTGT12710.10265671706888016No Hit
GGGGTA12550.10136442165337892No Hit
GGGTTG12510.1010413477995036No Hit
TGGGGA12460.10063750548215947No Hit
AGGGGT12440.10047596855522181No Hit
GTGGTG12390.10007212623787767No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)