FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1025251
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT66780.6513526931453859No Hit
GGGGGG27210.26539842438583333No Hit
TGGGGG27160.26491073893124706No Hit
GGGTGG21460.20931459710841538No Hit
GTGGGG19890.19400127383440738No Hit
GGGGGT17860.17420124437820594No Hit
GGGGTG16900.16483768365015006No Hit
GGGTGT16580.1617164967407981No Hit
TTGGGG15430.15049973128531452No Hit
GTGTGT14890.1452327283757831No Hit
AGGGGG14740.14376967201202437No Hit
GTGTGG14720.14357459783018986No Hit
GTGGGT14710.14347706073927263No Hit
TGGGTG14620.1425992269210174No Hit
GGTGGG14610.14250168983010014No Hit
TGTGTG13860.1351864080113065No Hit
TTGTGG13630.13294305492020977No Hit
GGTGTT13610.1327479807383753No Hit
GGGCGG13550.1321627581928718No Hit
TGGGTT13320.12991940510177508No Hit
GGGTTT13290.12962679382902334No Hit
TGGGGT12740.12426225382857466No Hit
GGTGTG12500.1219213636465607No Hit
GGGGGC12500.1219213636465607No Hit
CGGGGG12480.1217262894647262No Hit
GTTGGG12430.12123860401013996No Hit
GGGGCG12380.12075091855555371No Hit
GGGGAG12370.12065338146463646No Hit
ATGGGG12330.12026323310096747No Hit
GGGGGA12020.11723958328253277No Hit
TGGTGG11970.11675189782794652No Hit
GGGTAG11800.1150937672823533No Hit
GGGTTG11620.11333809964584282No Hit
GTGTTG11530.11246026582758759No Hit
GGCTGG11390.1110947465547461No Hit
GTTTGG11350.11070459819107711No Hit
GCTGGG11200.10924154182731839No Hit
TGAGGG11070.10797355964539414No Hit
GGGGTT11020.10748587419080792No Hit
GGAGGG10840.10573020655429745No Hit
GTGGTG10660.10397453891778695No Hit
GGTGGT10610.10348685346320073No Hit
AGTGGG10580.10319424219044898No Hit
CGTGGG10400.10143857455393851No Hit
TTGGGT10290.10036566655384878No Hit
TGTGGG10280.10026812946293151No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)