FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1148763
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT355813.097331651524292No Hit
GGGGGG51640.449527012969603No Hit
TGCAAT31430.27359864480314916No Hit
CGGGGG28940.2519231556030269No Hit
GGGGTG27370.23825628088648396No Hit
GGGGGT27360.23816923072905374No Hit
TGGGGG26820.23346852222782244No Hit
GGGGGA26250.2285066632543005No Hit
AGGGGG25860.22511170711452233No Hit
GTGGGG24130.21005202987909605No Hit
GGGTGG23740.20665707373931785No Hit
GTAATT23400.20369736838669072No Hit
GCGGGG23280.2026527664975282No Hit
GGGCGG21520.1873319387898113No Hit
GGGAGG21320.1855909356412071No Hit
GCATTT20970.18254418013114979No Hit
GGTGGG20100.17497081643472154No Hit
GGAGGG19370.16861615494231622No Hit
GAGGGG19100.16626580069170055No Hit
GGGGAG17800.15494928022577328No Hit
GGGGCG17540.15268597613258783No Hit
TGGGGT16650.14493851212129918No Hit
GGGGGC15780.13736514842487094No Hit
GGGTGT15570.13553709511883652No Hit
GTGTGG15210.13240328945134897No Hit
TTGGGG14440.12570042732922282No Hit
GGTTGG14390.12526517654207178No Hit
ATGGGG14350.12491697591235093No Hit
GGCGGG14160.12326302292117695No Hit
CTGGGG14110.1228277721340259No Hit
GGAGTG14050.12230547118944465No Hit
GCAATG13980.12169612008743319No Hit
AGTGGG13520.11769181284564352No Hit
GGGTTG13480.11734361221592268No Hit
TGGTGG13270.1155155589098883No Hit
GGAGGT13010.11325225481670284No Hit
GGTGTG12950.11272995387212159No Hit
GCGGGT12840.11177240214038926No Hit
TGGAGG12640.11003139899178507No Hit
CGGGGT12610.10977024851949445No Hit
GTGGAG12600.10968319836206424No Hit
TGAGTG12550.10924794757491318No Hit
GCCATT12480.10863859647290172No Hit
GTAGGG12340.10741989426887878No Hit
AGGGGT12320.10724579395401837No Hit
TGGGGA12300.10707169363915794No Hit
GGGTAG12090.10524364033312356No Hit
GCGTGG11950.1040249381291006No Hit
GGGTGA11740.1021968848230662No Hit
CTGCAA11720.10202278450820577No Hit
GGTGAG11720.10202278450820577No Hit
GGCTGG11510.10019473120217139No Hit
GTTGGG11490.10002063088731096No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)