FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9760329
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG239490.2453708271514208No Hit
TGGGGG147490.15111170945159738No Hit
GTGGGG146030.14961585823592627No Hit
GGGGGT141530.1450053579136523No Hit
GGGTGG138410.14180874435687568No Hit
GGCGGG138200.14159358767516955No Hit
GGTGGG136490.13984159755270545No Hit
CGGGGG133830.13711627958442793No Hit
AGGGGG132430.13568190170638716No Hit
GGGGCG126790.1299034079691371No Hit
GCGGGG123180.1262047621550462No Hit
GGGGTG122710.12572322101027536No Hit
GGGCGG120280.12323355083624743No Hit
GGAGGG117610.12049798731169821No Hit
GGGGGC117390.12027258507372035No Hit
GAGGGG116510.11937097612180901No Hit
GGGGGA108050.11070323551593395No Hit
GTGTGG102890.10541652847972645No Hit
GGGGTT100940.10341864500674107No Hit
GGTGGT99420.10186132045343964No Hit
GGGGAG97710.10010933033097554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)