FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8556850
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG253270.2959850879704564No Hit
GTGGGG159570.1864821750994817No Hit
GGGTGG158600.18534858037712476No Hit
GGGGGT154230.1802415608547538No Hit
TGGGGG150750.17617464370650415No Hit
GGTGGG133930.15651787748996418No Hit
GGGGTG126050.1473088811887552No Hit
AGGGGG118840.13888288330401957No Hit
GGGGGC117220.1369896632522482No Hit
GGGGGA113040.13210468805693684No Hit
GGGGTT110090.1286571577157482No Hit
GTGTGG107980.12619129703103363No Hit
TGTGGG103880.12139981418395789No Hit
GGAGGG103520.12097909861689758No Hit
TTGGGG103000.12037139835336602No Hit
GTTGGG102850.12019610020042422No Hit
CGGGGG102700.12002080204748242No Hit
GGGTGT102400.11967020574159884No Hit
GCGGGG102340.11960008648042211No Hit
GAGGGG95660.1117934754027475No Hit
GTGGGT95060.11109228279098032No Hit
GGGGTA94960.11097541735568581No Hit
GGTGGT94480.11041446326627205No Hit
GGGAGG94180.11006386696038846No Hit
TGGTGG93420.10917568965215005No Hit
GTGGTG91810.1072941561439081No Hit
TGGGTG90370.10561129387566687No Hit
GGGGCG88750.10371807382389547No Hit
GGGTTG88680.10363626801918932No Hit
GGGGAG87240.10195340575094808No Hit
GGTTGG86010.10051596089682535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)