FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6654077
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG204660.30757083213795094No Hit
GTGGGG133000.199877458586668No Hit
GGGTGG117660.17682392313764927No Hit
GGGGGT116940.1757418797528192No Hit
GGGGTG112350.16884385317452744No Hit
TGGGGG111920.16819763281969838No Hit
GGTGGG108020.1623365644852021No Hit
AGGGGG96460.14496375680654133No Hit
GGGGAG93080.13988416424997788No Hit
GGGGCG91960.1382009856513533No Hit
GGCGGG91090.1368935165613503No Hit
GGGCGG90230.13560107585169212No Hit
CGGGGG90060.13534559338582947No Hit
GCGGGG88810.13346704584272168No Hit
GGAGGG88520.13303122281272067No Hit
GGGAGG84630.12718518285856928No Hit
GTGTGG84060.1263285651789121No Hit
GGGGGA83810.12595285567029055No Hit
GAGGGG82140.12344311615269857No Hit
GGGGGC79690.11976116296820731No Hit
GGGTTG79270.1191299709937231No Hit
TTGGGG74270.11161578082129198No Hit
GTGGGT74120.11139035511611903No Hit
GGGGTT73920.11108978750922179No Hit
GGTGGT69950.10512352051231147No Hit
GTTGGG69200.1039963919864468No Hit
GGTTGG68710.10326000134954856No Hit
GTGGTG68640.10315480268713452No Hit
TGGGGT67490.10142653894747536No Hit
TGGTGG67240.10105082943885381No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)